Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g0182 ATGATGAAAGAAATGGGAAGAGGGAAGATTGAAATAAAGAGGATAGAGAATACAACGAATCGGCAAGTGACGTTCTGCAAGAGAAGGAATGGGCTTCTGAAGAAGGCCTATGAGCTGTCTGTCCTCTGTGATGCTGAAGTTGCCCTCATCGTCTTCTCCAGCCGTGGCCGTCTCTACGAGTATTCTAACAACAACATAAGGTCAACGATAGAGAGGTACAAAAAGGCTTGTTCAGATAGTTCTGGTGCATGCTCTATTACTGAAATCAATGCTCAGTATTATCAGCAAGAATCCGCGAAGCTGCGTCAGCAAATTCAGATGCTTCAAAATTCAAACAGGCACTTGATGGGTGATGCATTAAGCACACTCACTGTGAAAGAACTGAAGCAGCTGGAAAACAGACTCGAACGAGGAATCTCTCGAATCAGATCTAAGAAGCATGAGATGCTGCTAGCAGAAATCGAATACCGGCAAAAAAGGGAGATTGAGCTGGAAAATGAAAATATCTGCCTTCGGACTAAGATAGCTGAAATGGAGAGGGATGAGCAGCAAGCAAACATGGTGTCAGGAGAGGAGCAGCTGAGTGCGATGCAGCAAGCATTGGCTTCTCGCAATTTCTTCAATCCAATTACCATAATCGAACCCCCTGCAACTCCTTACTCTCACTCTGACAAGAAGATGCTTCATCTTGGGTGA 696 0.4468 MMKEMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNIRSTIERYKKACSDSSGACSITEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGISRIRSKKHEMLLAEIEYRQKREIELENENICLRTKIAEMERDEQQANMVSGEEQLSAMQQALASRNFFNPITIIEPPATPYSHSDKKMLHLG 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g0182 231 CDD MADS_MEF2_like 6 80 IPR033896 GO:0000977|GO:0045944
Prci7g0182 231 Pfam K-box region 90 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci7g0182 231 Gene3D - 18 80 IPR036879 GO:0003677|GO:0046983
Prci7g0182 231 SMART madsneu2 5 64 IPR002100 GO:0003677|GO:0046983
Prci7g0182 231 FunFam agamous-like MADS-box protein AGL11 17 100 - -
Prci7g0182 231 Coils Coil 125 148 - -
Prci7g0182 231 ProSiteProfiles MADS-box domain profile. 5 65 IPR002100 GO:0003677|GO:0046983
Prci7g0182 231 PANTHER SERUM RESPONSE FACTOR HOMOLOG 5 183 - -
Prci7g0182 231 SUPERFAMILY SRF-like 6 77 IPR036879 GO:0003677|GO:0046983
Prci7g0182 231 ProSitePatterns MADS-box domain signature. 7 61 IPR002100 GO:0003677|GO:0046983
Prci7g0182 231 Coils Coil 91 111 - -
Prci7g0182 231 PRINTS MADS domain signature 42 63 IPR002100 GO:0003677|GO:0046983
Prci7g0182 231 PRINTS MADS domain signature 27 42 IPR002100 GO:0003677|GO:0046983
Prci7g0182 231 PRINTS MADS domain signature 7 27 IPR002100 GO:0003677|GO:0046983
Prci7g0182 231 Coils Coil 161 181 - -
Prci7g0182 231 ProSiteProfiles K-box domain profile. 91 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci7g0182 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 14 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g0182 Prci-Chr7 11310961 11320857 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g0182 5 231 MADS-box Gene Family AT4G09960 73.707 6.96e-115 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci7g0182 K-box 5.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g0182 K09264 - gmx:100301905 365.925