Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g0181 ATGGGAAGAGGGAAGATTGAAATAAAGAGGATAGAGAATACAACGAATCGGCAAGTGACGTTCTGCAAGAGAAGGAATGGGCTTCTGAAGAAGGCCTATGAGCTGTCTGTCCTCTGTGATGCTGAAGTTGCCCTCATCGTCTTCTCCAGCCGTGGCCGTCTCTACGAGTATTCTAACAACAACAGCATAAGGTCAACGATAGAGAGGTACAAAAAGGCTTGTTCAGATAGTTCTGGTGCATGCTCTATTACTGAAATCAATGCTCAGTATTATCAGCAAGAATCCGCGAAGCTGCGTCAGCAAATTCAGATGCTTCAAAATTCAAACAGGCACTTGATGGGTGATGCATTAAGCACACTCACTGTGAAAGAACTGAAGCAGCTGGAAAACAGACTCGAACGAGGAATCTCTCGAATCAGATCTAAGAAGCATGAGATGCTGCTAGCAGAAATCGAATACCGGCAAAAAAGGGAGATTGAGCTGGAAAATGAAAATATCTGCCTTCGGACTAAGATAGCTGAAATGGAGAGGGATGAGCAGCAAGCAAACATGGTGTCAGGAGAGGAGCAGCTGAGTGCGATGCAGCAAGCATTGGCTTCTCGCAATTTCTTCAATCCAATTACCATAATCGAACCCCCTGCAACTCCTTACTCTCACTCTGACAAGAAGATGCTTCATCTTGGGTGA 687 0.4512 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNSIRSTIERYKKACSDSSGACSITEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGISRIRSKKHEMLLAEIEYRQKREIELENENICLRTKIAEMERDEQQANMVSGEEQLSAMQQALASRNFFNPITIIEPPATPYSHSDKKMLHLG 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g0181 228 FunFam agamous-like MADS-box protein AGL11 13 97 - -
Prci7g0181 228 Pfam K-box region 87 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci7g0181 228 Coils Coil 122 145 - -
Prci7g0181 228 Coils Coil 158 178 - -
Prci7g0181 228 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci7g0181 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci7g0181 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci7g0181 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci7g0181 228 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Prci7g0181 228 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci7g0181 228 Coils Coil 88 108 - -
Prci7g0181 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci7g0181 228 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci7g0181 228 Gene3D - 14 77 IPR036879 GO:0003677|GO:0046983
Prci7g0181 228 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci7g0181 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 180 - -
Prci7g0181 228 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g0181 Prci-Chr7 11310961 11321604 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g0181 1 228 MADS-box Gene Family AT4G09960 73.391 4.53e-113 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci7g0181 K-box 4.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g0181 K09264 - cit:102620453 365.925