Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g0053 ATGGTACGAGGAAAGGTTCAGATGAAGAGGATTGAGAACCCGGTGCACCGACAAGTGACCTTTTGCAAGCGCCGAGCTGGGCTCCTGAAGAAGGCTAAGGAGCTTTCTGTGCTTTGCGATGCTGAAATTGGCCTACTCATTTTCTCCGCCCACGGCAAGCTCTACGAGTTAGCCACCAAAGGGTACATGAAGTTCACTCGTGGACCTCAGCTTCAACCTGAACCGACCATCAATGAATCACATCCCCAGGACGCGAAAGAAGAGATCGATTTGCTGAAACAAGAAATTGGAACTCTGCAAAAGGGTCTCAGTTACTTGTTTGGAGGGGGAATCGGAACAATGGCGGTGGAGGAATTACAAGTGTTGGAGAAATACCTCGAAATGTGGATTTATCAGATTCGTTCAATGAAGATGAATAATATGTTACGTGAAATTCAAACATTGAGGGACAAGGAGGGAATACTCAAAGCTGCAAATAAGTATCTCCAGGATAAGGTTGTGGAGAATGATGGAATTACTGACTTTGGACCATTTGCTCTTGACACTTACCCCTTGATGATACAAGATGAATTATTGCAGTTTTAG 585 0.4479 MVRGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLLIFSAHGKLYELATKGYMKFTRGPQLQPEPTINESHPQDAKEEIDLLKQEIGTLQKGLSYLFGGGIGTMAVEELQVLEKYLEMWIYQIRSMKMNNMLREIQTLRDKEGILKAANKYLQDKVVENDGITDFGPFALDTYPLMIQDELLQF 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g0053 194 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 140 - -
Prci7g0053 194 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci7g0053 194 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci7g0053 194 ProSiteProfiles K-box domain profile. 82 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci7g0053 194 Gene3D - 15 153 IPR036879 GO:0003677|GO:0046983
Prci7g0053 194 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci7g0053 194 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Prci7g0053 194 Pfam K-box region 79 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci7g0053 194 CDD MADS_MEF2_like 3 61 IPR033896 GO:0000977|GO:0045944
Prci7g0053 194 SUPERFAMILY SRF-like 1 65 IPR036879 GO:0003677|GO:0046983
Prci7g0053 194 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci7g0053 194 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci7g0053 194 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g0053 Prci-Chr7 5791669 5798537 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g0053 1 194 MADS-box Gene Family AT1G71692 57.798 3.15e-69 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci7g0053 K-box 6.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g0053 - - gmx:100783345 274.248