Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g0039 ATGGCCCAGCAGTCATCTAGACTTCAGCGCTTGCTTACTCTCTTGGACACTGGGTCAACCCAAGCAACAAGGTTGACTGCTGCTCGCCAAATCGGGGACATTGCAAAATCTCATCCTCAAGACTTAAGCAGTCTGCTAAAGAAGGTATCTCAATATCTACACAGTAAAGCTTGGGATACTAGAGTTGCAGCTGCCCATGCAATCGGGGCTATTGCTGAGAATGTAAAGCACACAAGCTTGAATGAACTTATTGTTGCTGTTGCAACAAAAATATCTGATGCTGGGATATCCAGTAGTGTTGAAGATATGTGTGCATGGCCTTACTTACAATCTAAAATTACTGGAAGTTCATTTAGGAGCTTTGACCTCAACAAGGTGCTTGAATTTGGGGCGTTATTAGCATCTGGAGGACAGGAGTATGATGTAGGAAGTGATAATGTAAAGAACCCAAAGGAGCGGCTGGCTAGGCAAAAGCAAAATCTTCGGCGTCGGTTGGGTTTGGATGTGTGCGAACAATTCATGGATATCAGTGATGTGATAAGAGACGAAGATCTTATGGCATATAAATCAGATTTACGTTCATATGGAATTGATCACAGAGTTTTTACATCTCATTCTGTACATAACATCCAGAAAATGGTTGCCAATATGGTTCCTAGTGTTAAATCTAAGTGGCCAAGTGCAAGAGAACGGAATCTCTTAAAACGTAAAGCAAAAATGAACTCAAAAGACCAGACAAAAGGCTGGTGTGAGGATGGAAGTATAGAGGCATCACTTGCTCAAAATGTGACTTCTAGAGGCACATATCCTGATTCAGTAAATTACAATAAGGCTTTCATTTACGGTAATCATGATGAAGATGGATTTGATCATGATGGAGATGGGCGATGGCCTTTCCATATTTTTGTTGAGCAGCTTATTATTGATATGTTTAATCCTGTTTGGGAGGTACGCCATGGCAGTGTGATGGCATTGAGGGAGATTTTAACCCATCAAGGTGCATCTGCTGGAGTATTAAAGCTGGACTCACGCTTGGGGGCAGAACTATTTCTTGATTTGGAAGATAAAAGTGTATCAAGTGTCTTAAAGAGAGATAGGGAGATAGATTTGAATTTGCAAATTTCAGTGGATGAGTTTGATTCAAACTCTAAGAGGCCAAGACTTGAAGATGAATCATCCTCTTCCATGGATAGCAGGAACATTTGCAGCAATGGAGGTGATATTGAAATCAGCATTAAAACTGAAACTCTTGGATGCGATTTACCTATTGTTGACAGGAATGGACAATTTAATGTCAACTCTGTGGGCTTGGATCTGGAATCTCATTCCGATGGTTTATGTCATTCATACAAGGAACCTACTAGTATAGCTGAGCAGAAGGATTATTCTGGTGAGGATAAGATTCCATCTGGCAATCTTAATGGGCTTCCTCAGGATTGTGAGCTTATGAGCTTGATTAATGTGGCTAGAAGTTCCTGGCTTCAAAACTATGGATTTCTTCAAGATTGTGTAATACGCTTCTTGTGTGTGTTGTCACTAGATCGCTTTGGAGATTATGTTTCTGACCAGGTTGTTGCTCCTGTACGGGAAACCTGTGCACAAGCATTAGGCACTGCATTTAAGCACATGCATCCGGCATTAGTAAATGAAACATTAAATATATTGTTGAAAATGCAGTGTAGAGCAGAATGGGAGATTCGTCATGGAAGCCTTTTAGGTATCAAATATTTAGTTGCTGTGCGGCAGGAAATGCTTCCAGAATTGCTTGGACGTGTTCTTCCTGCATGCAAATTTGGGTTGGAGGATCCAGATGATGATGTCCGAGCAGTTGCTGCTGATGCTTTAATACCAGCTGCAGCTTCAATTGTTGCTTTACAGGGTCAAACTTTGCACTCAATTGTAATGCTACTGTGGGACATTTTGCTTGATTTGGACGACTTGAGCCCATCCACTAGCAGTGTCATGAATCTTCTGGCAGAAATTTATTCTCAGGATGAGATGGTTCCGAAGATGAATGGAGCAATTGAATTGGGAGATACAGAAATGGGTAATCTAATTGGAGTTGGTGGCAGCAGTGGTAGTAGCTGTAGTATTCATGACAAAAATCCTTATATGCTCTCGATGCTGGCACCACGCTTGTGGCCCTTTATGAGGCATAGCATCACCTCTGTTCGGTTTTCAGCAATTCGCACTTTGGAGAGGCTGCTTGAAGCTGGATATAGGAGAAGCATGTCTATGGAATGTAGATCTTCATTCTGGCCTTCTTTTATACTAGGAGATACCCTTCGAATTGTATTTCAGAATCTGCTATTGGAATCAAATGAGGCTATATTGCAGTGTTCCGAGGGAGTTTGGAGGCTTCTTGTTCAGTGTGCTGTGGAGGACTTGGAGATGGCTGCAAGATCTTATGAATTCTGGATAGAGCTTGCATCTACTCCGTTTGGTTCAGTATTAGATACGTCTAAAATGTTTTGGCCAGTTTTTCCACAAAAAAGCCAATCTAGAGCAGCAGCTAAAATGAGAGCGGTGAAGGTTGAAAATGAATATGGTGGGGATTTTGGCTTGGATTCTACTAAAGGAATTAATCTACAAGAAAAAAATGGAGATGTTTCCATGGGATCTGTCAAGATTGTTGTTGGTGCTGATGTTGATACATCAGTAACTAATACTAGAGTGATAACTGCTACTGGCATTGGAATTTTTGCTTCCAAACTGTCAGAGGTTTCCATTAATGATGTGATTGATCCACTATGGAATGCCCTTACCTCTTTTTCTGGTGTCCGTCGCCAGGTTGCGTCCATGGTACTTATTTCTTGGTTCAAGGAGATTAAAAAGAAGTCAATTACCGAAAACCATAATATTATTCCTGGTGTCCCAAATTATCTCAAAGACTGGCTGCTGGACCTATTGGCATGCTCTGATCCAGCATTCCCGACAAAGGATTCATTTCTTCCTTATTCTGAGCTTTCAAGAACATATTCAAAGATGCGTAGCGAGGCTGGTCAATTGCTTAATGCTATGAAGTGTTCTGGTTTTGATGACTTATTGTCATCTACAAAAGTTGATTTGGAGAGCTTGAGTGTGGATGATGCCATTAATTTTTGCGTCTCAAAAGTTCCGGCTTTGTGTGAAAGTGCGGGGAATGAATTCTTGGGAAGAAACATTATGGATGACATTGAGTCATCTAAACAGAGACTTTTGACAACTTCTGGCTATTTAAAATGTGTTCAGAGCAATTTGCACGTTACGGTTTCATCTGCAGTTGCAGCTGCAGTTGTCTGGATGGCAGAATTTCCTTCACGCCTCACCCCCAATTATATTGCCTTTGATGCTTCAATAAAACGAGAGCAGGAGGAAATACTGCAAATGAAGTCAGCTGAGGCACTGGCTGAGCTTATGTATCACTCTGTTGAACGTAGACCTTGCCCAAATGATAAATTAATTAAGAATATCTGTGGCTTGACTTGTATGGATCCCTCTGAGACGCCTCAAGCCGAATTTAATTAGATCATGGACAGCATTGATGACCAAGGTCGGATGTCCTTTGGAACTCCTGGCAGTAAACAGAGATCAAAGGCCCATGTGCTGGCTGGTGAAGATCGATCAAAGTTTGAGGGCTTTATTAGTAGACGTGGATCTGAACTCTCACTGAAGTTTCTATGTGATAAGTTTGGTGTTTCATTGTTTGATAAGCTTCCTAAGCTGTGGGATTGCCTTACTGAGGTGCTTAAGCCTAGCTCTGCTGAATCTCTTGCTGCTTCTGAAAAGGAAGCTGCTTTGGTTATTGAGACTGTTAGCAATCCCCAGACCTTGATTAACAATATTCAGGTGGTACGCTCTATTTCTTCCCTCCTGCATGAAGATTTGAAGCCTAAATTGTTGACACTTCTCCCTTGCATTTTCAAATGTGTTAAGCACCCTCATGTTGCAGTTAGATTAGCTGCTTCACGCTGTATTACTTCAATGGCCAGGTCAATGACTTTAAAAGTTATGGCAGCTGTTGTTGAAAATGCTGTCCCTATGTTGGCAGATGCTTCATCAGTTCATGCTCGGCAAGGAGCTGGCATGCTGATTAGTTTTCTTGTTCAGGGGCTTGGTGTTGAGCTGGTCCCTTATGCTCCTCTGTTAGTAGTTCCACTTCTTAGGTGTATGAGTGACTGTGATCAGTCCGTCAGACAGAGTGTTACACATAGTTTTGCCACTCTTGTACCTTTACTTCCTCTAGCACGGGGCCTTCCTCCACCTCTTGGTTTGGGGAAGGGTTTATCAAGAAACACAGAAGATGTAAAATTTCTGGAACAACTACTTGACAATTCTCATATTGAAGATTATCAGTTGTGCACTGAATTGAAAGTAACATTGAGAAGGTATCAGCAGGAAGGTATAAATTGGTTGGCTTTCTTGAAACGTTTCAAGCTTCATGGAATTTTATGTGATGACATGGGGCTTGGTAAAACTCTTCAAGCATCAGCAATTGTGGCATCTGAAATAGCTGAGCATCGAAGTCTGAATGAGAATGAGGAACTTCTGCCATCGTTAATCATTTGCCCATCAACACTGGTTGCACATTGGGCTTTTGAGATAGAGAAATATATTGATGTTTCTGTTGTATCTACTCTTCAATATGTTGGCTCTGCTCAAGAGCGGATGTGTATTAGAGATAATTTTTGTAAGCATAATGTCATTATAACATCATATGATGTTGTCCGAAAAGATATTGAATATTTGGGTCAGCTGCAATGGAATTACTGCATTTTAGATGAAGGACATATAATCAAGAATGCTAAGTCTAAAGTAACTCTAGCTGTAAAGCAGTTGAAAGCCCAACACCGCTTGATATTGAGTGGAACGCCAATACAGAATAACATCATGGACTTGTGGTCCCTTTTTGATTTTCTAATGCCAGGATTTCTTGGTACAGAGAGACAGTTCCATGCCACTTATGGAAAGCCGCTCCTAGCTGCAAGAGATCCCAAGTGCTCTTCTAGGGATGCTGAAGCAGGAGTTCTTGCTATGGAGGCATTGCATAAGCAGGTCATGCCTTTCCTTCTCCGTAGAACAAAGGAAGAAGTCTTGTCTGATCTGCCAGAAAAAATAATTCAAGACAGATACTGTGATTTAAGTCCTGTACAGCTTAAACTCTATGAACAGTTTTCTGGTTCTCGTGTCAAACGAGAAATCTCATCTATAGTAGCAATGAATGAATCAGCTGCGACAGAAGGAAGCAGCAGATCACCTAAAGCATCTTCACATGTTTTCCAGGCACTTCAATACTTGCTAAAGTTGTGCAGTCATCCTTTACTTGTCGTTAGTGAAAAGGTTCCTGATCAACTCTCTACCATCCTCTCAGAATTGTTGCCTGCTGGCTCTGAAATCATTTCAGAACTCCACAAACTACATCACTCCCCAAAATTGGTAGCTCTCCAAGAGATCTTGGAAGAATGTGGAGTAGGAGTTGATGGTTCAGGTTCTGAGAGTGCTGTTAGCATTGGGCAGCACAGGGTCTTGATATTTGCTCAACATAAGGCTTTTCTGGATATTATTGAAAGAGATTTATTCGAGACATATATGAAGAATGTCACATATTTGCGACTGGATGGATCTGTAGAGCCAGAGAAGCGTTTTGAAATTGTCAAGACATTCAATTCAGACCCTACCATTGATGTCTTATTGCTTACAACACATGTGGGTGGGCTTGGTTTGAACCTGACATCTGCGGATACCCTTGTTTTTGTGGAGCATGACTGGAATCCAATGCGAGATCATCAGGCTATGGACAGAGCACACCGTTTAGGTCAGAAAAAAGTTGTCAATGTCCACCGTCTAATAATGCGTGGTACTTTGGAAGAGAAAGTCATGAGCCTGCAAAGATTCAAAGTTTCAGTGGCTAATGCTGTCATTAATGCTGAAAATGCTAGTATGAAAACAATGAATACAGATCAGTTACTTGATTTGTTCGCATCGGCAGAAACCTTCAAGAAGGGAGCTCCTGCTGTGAACCGATTAAATAACACGGATGGAGATGCTAAATCCGCGGGCAGTGGGAAGGGGTTGAAAGCAATACTTGGAGGTTTGGAAGAGCTTTGGGACCATTCGCAATATACAGAAGAGTACGATCTGACTCAATTTTTGTCAAAGCTTAATGGCTGA 6150 0.4146 MAQQSSRLQRLLTLLDTGSTQATRLTAARQIGDIAKSHPQDLSSLLKKVSQYLHSKAWDTRVAAAHAIGAIAENVKHTSLNELIVAVATKISDAGISSSVEDMCAWPYLQSKITGSSFRSFDLNKVLEFGALLASGGQEYDVGSDNVKNPKERLARQKQNLRRRLGLDVCEQFMDISDVIRDEDLMAYKSDLRSYGIDHRVFTSHSVHNIQKMVANMVPSVKSKWPSARERNLLKRKAKMNSKDQTKGWCEDGSIEASLAQNVTSRGTYPDSVNYNKAFIYGNHDEDGFDHDGDGRWPFHIFVEQLIIDMFNPVWEVRHGSVMALREILTHQGASAGVLKLDSRLGAELFLDLEDKSVSSVLKRDREIDLNLQISVDEFDSNSKRPRLEDESSSSMDSRNICSNGGDIEISIKTETLGCDLPIVDRNGQFNVNSVGLDLESHSDGLCHSYKEPTSIAEQKDYSGEDKIPSGNLNGLPQDCELMSLINVARSSWLQNYGFLQDCVIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGTAFKHMHPALVNETLNILLKMQCRAEWEIRHGSLLGIKYLVAVRQEMLPELLGRVLPACKFGLEDPDDDVRAVAADALIPAAASIVALQGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQDEMVPKMNGAIELGDTEMGNLIGVGGSSGSSCSIHDKNPYMLSMLAPRLWPFMRHSITSVRFSAIRTLERLLEAGYRRSMSMECRSSFWPSFILGDTLRIVFQNLLLESNEAILQCSEGVWRLLVQCAVEDLEMAARSYVXFWIELASTPFGSVLDTSKMFWPVSXPQKSQSRAAAKMRAVKVENEYGGDFGLDSTKGINLQEKNGDVSMGSVKIVVGADVDTSVTNTRVITATGIGIFASKLSEVSINDVIDPLWNALTSFSGVRRQVASMVLISWFKEIKKKSITENHNIIPGVPNYLKDWLLDLLACSDPAFPTKDSFLPYSELSRTYSKMRSEAGQLLNAMKCSGCXDDLLSSTKVDLESLSVDDAINFCVSKVPALSXESAGNEFLGRNIMDDIESSKQRLLTTSGYLKCVQSNLHVTVSSAVAAAVVWMAEFPSRLTPNYIAFDASIKREQEEILQMKSAEALAELMYHSVERRPCPNDKLIKNICGLTCMDPSETPQAEFNXIMDSIDDQGRMSFGTPGSKQRSKAHVLAGEDRSKFEGFISRRGSELSLKFLCDKFGVSLFDKLPKLWDCLTEVLKPSSAESLAASEKEAALVIETVSNPQTLINNIQVVRSISSLLHEDLKPKLLTLLPCIFKCVKHPHVAVRLAASRCITSMARSMTLKVMAAVVENAVPMLADASSVHARQGAGMLISFLVQGLGVELVPYAPLLVVPLLRCMSDCDQSVRQSVTHSFATLVPLLPLARGLPPPLGLGKGLSRNTEDVKFLEQLLDNSHIEDYQLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASEIAEHRSLNENEELLPSLIICPSTLVAHWAFEIEKYIDVSVVSTLQYVGSAQERMCIRDNFCKHNVIITSYDVVRKDIEYLGQLQWNYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQFHATYGKPLLAARDPKCSSRDAEAGVLAMEALHKQVMPFLLRRTKEEVLSDLPEKIIQDRYCDLSPVQLKLYEQFSGSRVKREISSIVAMNESAATEGSSRSPKASSHVFQALQYLLKLCSHPLLVVSEKVPDQLSTILSELLPAGSEIISELHKLHHSPKLVALQEILEECGVGVDGSGSESAVSIGQHRVLIFAQHKAFLDIIERDLFETYMKNVTYLRLDGSVEPEKRFEIVKTFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDHQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASMKTMNTDQLLDLFASAETFKKGAPAVNRLNNTDGDAKSAGSGKGLKAILGGLEELWDHSQYTEEYDLTQFLSKLNG 2053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g0039 2053 Pfam Helicase conserved C-terminal domain 1836 1936 IPR001650 -
Prci7g0039 2053 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1470 1640 IPR014001 -
Prci7g0039 2053 CDD SF2_C_SNF 1805 1947 - -
Prci7g0039 2053 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 4 2052 IPR044972 GO:0003677|GO:0016887|GO:0017025
Prci7g0039 2053 Gene3D - 508 740 IPR011989 -
Prci7g0039 2053 FunFam TATA-binding protein-associated factor BTAF1 1 96 - -
Prci7g0039 2053 SUPERFAMILY ARM repeat 6 1496 IPR016024 -
Prci7g0039 2053 Pfam SNF2-related domain 1476 1772 IPR000330 GO:0005524|GO:0140658
Prci7g0039 2053 Gene3D - 4 95 IPR011989 -
Prci7g0039 2053 CDD DEXHc_Mot1 1458 1690 IPR044078 GO:0005524
Prci7g0039 2053 SMART helicmild6 1850 1936 IPR001650 -
Prci7g0039 2053 Gene3D - 1700 2016 IPR027417 -
Prci7g0039 2053 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1827 1982 IPR001650 -
Prci7g0039 2053 FunFam TATA-binding protein-associated factor 172 1700 2018 - -
Prci7g0039 2053 FunFam TATA-binding protein-associated factor BTAF1 1206 1416 - -
Prci7g0039 2053 FunFam B-TFIID TATA-box-binding protein-associated factor 1 1428 1689 - -
Prci7g0039 2053 Pfam Domain of unknown function (DUF3535) 784 1242 IPR022707 -
Prci7g0039 2053 Gene3D - 1212 1415 IPR011989 -
Prci7g0039 2053 SMART ultradead3 1454 1651 IPR014001 -
Prci7g0039 2053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1436 1690 IPR027417 -
Prci7g0039 2053 Gene3D - 1429 1689 IPR038718 -
Prci7g0039 2053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1691 1992 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g0039 Prci-Chr7 4811544 4869574 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g0039 1430 1991 RAD5 or RAD16-like Gene Family AT1G02670 27.451 1.85e-43 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci7g0039 DUF3535 1.3e-89 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g0039 K15192 - gmx:100777977 3155.93