LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci757g0001	ATGCGAAACTGCAACACCATGTTTTGGCCGTCAAATCAGCGCCCATGCCCAGATTGGGAGTTCTGGCAGGAGCCCTCTGATGGTTTTCTGGTCTCACTGTCAAGCAGCCAAGTTCACGACGACCCTTTCCATGATTATCTCTGCTTTGATATGGTTGACAGGGCAAATCAACCACTGGTGAATATGGAAGCCATGGAAGCGAAGACTGTCAAGGAAAGAACATACATAGGGGTGAGGAAGAGACCATGGGGAAAATTCGCAGCAGAGATCAGAGACACTACCAGGAATGGCAGAAGAGTTTGGCTGGGAACGTTCCAGAGCGCGGAGGAAGCTGCTTTAGCTTACGACCAAGCTGCATTCACCATGAGAGTCAACTCTGCTGTTCTGAATTTTCCGGTGGAGAGGGTTAGGCAGTCTCTGCGAGATATCAGGTATGGCTGCCGCAAAGGCTGTTCGCCTGCTTTAGCCCTCAAAGAGAGGCACTACATCCAAAGAAAACTGTCGTCAAAGGCTGAGAAAGACAGAGCCAAGCAGCAACCAGAGGTGGTGGTTCTAGAGGACTTGGGCGCTGAATATCTGGAGCAACTTCTCAGCGCATGTGATCAAAATACAAGCCCTATTTACTTCAAATAA	633	0.4945	MRNCNTMFWPSNQRPCPDWEFWQEPSDGFLVSLSSSQVHDDPFHDYLCFDMVDRANQPLVNMEAMEAKTVKERTYIGVRKRPWGKFAAEIRDTTRNGRRVWLGTFQSAEEAALAYDQAAFTMRVNSAVLNFPVERVRQSLRDIRYGCRKGCSPALALKERHYIQRKLSSKAEKDRAKQQPEVVVLEDLGAEYLEQLLSACDQNTSPIYFK	210

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci757g0001	210	PRINTS	Ethylene responsive element binding protein signature	75	86	IPR001471	GO:0003700\|GO:0006355
	Prci757g0001	210	PRINTS	Ethylene responsive element binding protein signature	98	114	IPR001471	GO:0003700\|GO:0006355
	Prci757g0001	210	PANTHER	DNA-BINDING DOMAIN	62	198	IPR044808	GO:0003700\|GO:0009873
	Prci757g0001	210	SUPERFAMILY	DNA-binding domain	74	134	IPR016177	GO:0003677
	Prci757g0001	210	ProSiteProfiles	AP2/ERF domain profile.	74	132	IPR001471	GO:0003700\|GO:0006355
	Prci757g0001	210	Gene3D	AP2/ERF domain	74	134	IPR036955	GO:0003700\|GO:0006355
	Prci757g0001	210	SMART	rav1_2	74	138	IPR001471	GO:0003700\|GO:0006355
	Prci757g0001	210	FunFam	Ethylene-responsive transcription factor 2	73	134	-	-
	Prci757g0001	210	Pfam	AP2 domain	75	123	IPR001471	GO:0003700\|GO:0006355
	Prci757g0001	210	CDD	AP2	75	133	IPR001471	GO:0003700\|GO:0006355

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci757g0001	72	203	AP2-EREBP Transcription Factor Family	AT3G23240	59.124	9.57e-55	172

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Prci757g0001		AP2	1.2e-13	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci757g0001	K14516		-	gmx:100527364	233.032