LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci743g0003	ATGGACATCGACTCCTCACACACCCCCAATTGGCTCTATGATTATGGCTTTGACGTCCCTGTCGCCGGAGCTGATTTGCCGGTCGTCTCTTCTGGCGGTTTCAACTGGGTGTCTCCTACTTTTCACGGTTCTTCCGATACGAGGTTGAAGTCTGAATCATGTGCATCTGGCTCCAAGGCATGCCGTGAGAAACTTAGGAGGGATAGACTGAATGAGAGGTTCCTGGAATTGAGTTCTATCTTGGAGCCTGGTAAGCTGCCCAAGATGGATAAGACTGCTATATTAAGTGATGCAGTTCGAATGTTAACAGAATTACGAACTGAAGCCCAGAAGCTGAAGGAAACAAACGATGAATTGCTTGAAAAAATCAAGGAACTGAAGGCAGAGAAGAACGAGCTTCGTGATGAAAAGAACAGGCTGAAGATGGATAAAGAAAAGCTGGAGCAACGGGTCAAAGGGATGAATGCACAGCCAACCTATCTTTCTCATCCTTCTGCTGCATTTAGTGCTCAAGGACAAACTGCCAGCCACAAGCTGATACCATTTGTTGGTTATCCTGGAATCGGCATGTGGCAGTTTTTGCCACCTGCTGCGGTTGATACATCTCGGGATCATCTGCTTCGCCCTCCTGTCGCTTAA	639	0.4742	MDIDSSHTPNWLYDYGFDVPVAGADLPVVSSGGFNWVSPTFHGSSDTRLKSESCASGSKACREKLRRDRLNERFLELSSILEPGKLPKMDKTAILSDAVRMLTELRTEAQKLKETNDELLEKIKELKAEKNELRDEKNRLKMDKEKLEQRVKGMNAQPTYLSHPSAAFSAQGQTASHKLIPFVGYPGIGMWQFLPPAAVDTSRDHLLRPPVA	212

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci743g0003	212	Gene3D	-	47	103	IPR036638	GO:0046983
	Prci743g0003	212	PANTHER	BHLH TRANSCRIPTION FACTOR	44	212	IPR044818	GO:0003700\|GO:0006355\|GO:0006879\|GO:0046983
	Prci743g0003	212	CDD	bHLH_AtILR3_like	59	134	-	-
	Prci743g0003	212	Coils	Coil	95	157	-	-
	Prci743g0003	212	Gene3D	arf6 gtpase in complex with a specific effector, jip4	104	158	-	-
	Prci743g0003	212	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	54	105	IPR011598	GO:0046983
	Prci743g0003	212	Pfam	Helix-loop-helix DNA-binding domain	58	105	IPR011598	GO:0046983
	Prci743g0003	212	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	60	130	IPR036638	GO:0046983
	Prci743g0003	212	SMART	finulus	60	111	IPR011598	GO:0046983

Showing 1 to 9 of 9 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci743g0003	5	212	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT5G54680	53.448	4.13e-74	222

Showing 1 to 1 of 1 entries

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Prci743g0003		HLH	9.8e-09	No_clan

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci743g0003	-		-	gmx:100803143	274.248

Showing 1 to 1 of 1 entries