Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci708g0001 ATGGGGGTGGGGGGAAATTTCTGGGATTTGCTAAAGCCATACGCACGAGACGAAGGTTTGGATTTCTTAAGGGACAAGCGAGTCGCCGTGGACCTCTCCTTCTGGATCATCCAGCATCAGACTGCTATCAAGGCCCATGCTCGGAAACCCCATCTGCGACTCACCTTCTTTCGCACTATCAATCTCTTCTCCAAGTTTGGAGCATATCCAGTCTTCGTGGTAGATGGGACCCCATCGCCGTTGAAATCGCAAGCTAGGATTTCAAGATTTTTCCGTTTTTCTGGCATTGAACTAACAGATTTTCCGGGTGAAGAAAGTGTTCCCGTTGAGAGGAACCGTGAATTTTCAAGACGTGTTAAAGAATGTGTGGAACTTGTTGAGCTACTCGGAATGCCTGTACTATATGCTAAAGGAGAGGCAGAAGCACTCTGTGCCCAATTAAATAGTGAAGGTTATGTGGATGCTTGCATTACATCTGACAGTGATGCATTCCTATTCGGTGCGAAATGTGTCATAAAAAGCTTCTGCTCTAATGCTAAAGAAGCGTTTGAATGCTACAATATGGAAGATATTGAATCTGGTCTTGGGTTGAAGAGGAAACACCTCATAGCTATTTCTCTTCTTGTTGGAAATGATCATGATTTAACAGGTGTTCAAGGGATTGGGCTTGATACGGCTCTTCGTTTTGTTAGTTGTTTTAGTGAAGCAGATGTATTGAATAGATTGCAAGAGATTGGCAATGGGAAAGTTTCTCCCACCGGCATTAAATCTGCTGAAGATTGTGTTGACATGGATGGGAACTTTCCAAGCCATAAACAGCTTCACTGTTCCTTTTGTGGGCATCCAGGCAGCAAAAGAGATCATATGAAATCTCCTTGTGAATTTTGCAGTGCAAATGATAATGAAGGTTGCTTGAGAAAACCAGAGGGTTTTACTTGCGGTTGCCCTTCCTGTGATATGCTTAGGAAACGAAAGGCACAGAGAAGGATGGAAAATTGGCACACAAAAATTTGTCTCAAGATTGCAAAGGAGCCCAAGTTTCCCAGAGATGAAATCATTGAAATGTACTTCTGCAATGACAATGGTTGCCACTCTGCAAGTGATGGTCCTTGCATCTCATGGAGTAGACCAAAGATTGAGATGCTGATAGATTTTTTAAACTTTCATCAGCATTGGGATCCGGCTTACATTCGAAAGCAGATTTTTCCTATGATGTCTACCATCTTTTTGAGAGACATGGCTAATACTCCTGTAGAAAGTCTGGTATTTGGGACATTTGAGTTTGATTCAATACAACGTGTGAAGATAAGATATGGATATCAATTTTATGTTGTCAAGTGGAAATGTGCAGTTGGCAACATTAGTTGTACAGTTCCATCACACGAATCTAGCATGCAACAAGCAGATGGTAGTGAGATTGATGATTTTGTGGATCTACTAGATGATTCTAGTGTCTCTGATATGAGTGATGGTTGTAGCTTCCTATTGACAGATGAAAATATGGATCTTGTGAGGGCTGCATTTCGAGCAAAAGTTGAAAGGTTTTGGCAAGAACAGGAATTGAAGGGATTGAAAATAAGAAAGACTTCTACCCCGCAATCTCTAGAGAATGAGAGTTCATCATCATTGAACACAAGAAGCACTCAACTAAGCATTACAAAGTTCTACCGCTCAGTGAAAACGCAAAATCATTCAAAACAGGGAGAGGCATCTGATAGCTTTGATAACCTTGATGGTGGGACCTCAAAAGGGAAAAGAACGATGTCCAGTCCAAATCTAACGAAATCAGCGAGGCGTCGCCTTTTATTTAAGTAG 1815 0.4171 MGVGGNFWDLLKPYARDEGLDFLRDKRVAVDLSFWIIQHQTAIKAHARKPHLRLTFFRTINLFSKFGAYPVFVVDGTPSPLKSQARISRFFRFSGIELTDFPVXEESVPVERNREFSRRVKECVELVELLGMPVLYAKGEAEALCAQLNSEGYVDACITSDSDAFLFGAKCVIKSFCSNAKEAFECYNMEDIESGLGLKRKHLIAISLLVGNDHDLTGVQGIGLDTALRFVSCFSEADVLNRLQEIGNGKVSPTGIKSAEDCVDMDGNFPSHKQLHCSFCGHPGSKRDHMKSPCEFCSANDNEGCLRKPEGFTCGCPSCDMLRKRKAQRRMENWHTKICLKIAKEPKFPRDEIIEMYFCNDNGCHSASDGPCISWSRPKIEMLIDFLNFHQHWDPAYIRKQIFPMMSTIFLRDMANTPVESLVFGTFEFDSIQRVKIRYGYQFYVVKWKCAVGNISCTVPSHESSMQQADGSEIDDFVDLLDDSSVSDMSDGCSFLLTDENMDLVRAAFRAKVERFWQEQELKGLKIRKTSTPQSLENESSSSLNTRSTQLSITKFYRSVKTQNHSKQGEASDSFDNLDGGTSKGKRTMSSPNLTKSARRRLLFK 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci708g0001 605 FunFam Flap endonuclease GEN-like 1 198 254 - -
Prci708g0001 605 MobiDBLite consensus disorder prediction 562 597 - -
Prci708g0001 605 MobiDBLite consensus disorder prediction 562 600 - -
Prci708g0001 605 Gene3D - 5 197 - -
Prci708g0001 605 CDD PIN_GEN1 2 202 - -
Prci708g0001 605 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 198 412 IPR036279 -
Prci708g0001 605 SMART xpgn3 1 96 IPR006085 GO:0004518
Prci708g0001 605 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 203 218 IPR006084 -
Prci708g0001 605 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 70 89 IPR006084 -
Prci708g0001 605 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 148 168 IPR006084 -
Prci708g0001 605 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 127 144 IPR006084 -
Prci708g0001 605 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 25 39 IPR006084 -
Prci708g0001 605 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 544 IPR006084 -
Prci708g0001 605 SUPERFAMILY PIN domain-like 6 213 IPR029060 -
Prci708g0001 605 Pfam XPG N-terminal domain 1 86 IPR006085 GO:0004518
Prci708g0001 605 SMART xpgineu 128 198 IPR006086 GO:0004518
Prci708g0001 605 Pfam XPG I-region 131 213 IPR006086 GO:0004518
Prci708g0001 605 Gene3D - 198 261 - -
Prci708g0001 605 FunFam Flap endonuclease GEN-like 1 2 197 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci708g0001 26 231 Core DNA Replication Machinery Family AT5G26680 29.204 8.37e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci708g0001 K15338 - gmx:100791251 798.505