Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g2897 ATGACTTGTTTTCCTGTATTATTTGGTAGAAGGTCGCATTCTTCAGCGGGGCTAGATCCAGACATTGAAGGAGAATTTTCTGGTCTTCACAATGTCAGACTTTATACATACAAAGAACTGCGAAATGCCACTGAAGATTTTAGTCCTGCCAATAAAATTGGAGAGGGCGGTTTTGGTTCTGTTTTCAAGGGACGGCTAAAAGGTGGAAAAGTTGCAGCTATTAAAGTTCTTTCAGCTGAATCAAAACAAGGGGTGAGGGAATTCTTGACAGAGATTAAGGTGATCTCAGAAATAGAGCATGAAAATTTAGTTAGGTTATATGGCTGTTGTGTGGAAGGAAATCACAGAATACTGGTCTACAATTACCTTGAGAATAACAGCCTTGCACAAACCCTTATAGGTAGACGACATGGCAATATCCAATTCAATTGGCGAACACGATCTAGAATATGCATTGGGGTTGCACGTGGGATTGCCTTTCTCCATGAGGAAGTAAGACCCCATATAGTTCATAGGGACATAAAAGCAAGTAACATTCTTCTTGACAATGACCTCACGCCCAAGATTTCAGATTTTGGGCTTGCAAAACTGATTCCGGCAAACATGACCCATGTTAGCACACGTGTGGCGGGAACTATAGGTTACCTGGCACCAGAGTATGCAATAGGAGGCAAGCTGACACGAAAAGCTGATGTATACAGCTTCGGAGTCCTCCTTGTGGAGATTGTAAGTGGGAGATGTAACACAAATACACAGTTACCAATTGAAGAACAGTACATTCTAGAAAGGACATGGGATCTTTATGAGCGAAATGAATTGGTGGCCCTGGTAGATGAATCGCTGAACGGAGACTTTGATGCTGAGGAAGCTTGCAGGTTTTTGAAGATTGGCCTTCTTTGCACCCAGGATGATCCAAAGGTGCGGCCGTCCATGTCTTCAGTGGTTAACATGCTTGCCGGCAGAATGCGGGTCGGCGAGAGGAACATAACAAAACCAGCCTTGATCTCTGATTTTATGGACCTCAAAGTGAGGAAAAATCCAGCAAGTAATATTGAGATGGAGACTCAGGCTTCATCTTCATACCATTCATCTTCGGCCTCGTACAACCAGGATACTACATTTTCATCAACAGTTTCAACTGCTGCAGATACAACCTTCACTGCACGATATGATCAAAGCATGTAA 1185 0.4304 MTCFPVLFGRRSHSSAGLDPDIEGEFSGLHNVRLYTYKELRNATEDFSPANKIGEGGFGSVFKGRLKGGKVAAIKVLSAESKQGVREFLTEIKVISEIEHENLVRLYGCCVEGNHRILVYNYLENNSLAQTLIGRRHGNIQFNWRTRSRICIGVARGIAFLHEEVRPHIVHRDIKASNILLDNDLTPKISDFGLAKLIPANMTHVSTRVAGTIGYLAPEYAIGGKLTRKADVYSFGVLLVEIVSGRCNTNTQLPIEEQYILERTWDLYERNELVALVDESLNGDFDAEEACRFLKIGLLCTQDDPKVRPSMSSVVNMLAGRMRVGERNITKPALISDFMDLKVRKNPASNIEMETQASSSYHSSSASYNQDTTFSSTVSTAADTTFTARYDQSM 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g2897 394 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Prci6g2897 394 SUPERFAMILY Protein kinase-like (PK-like) 27 318 IPR011009 -
Prci6g2897 394 ProSiteProfiles Protein kinase domain profile. 47 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci6g2897 394 FunFam cold-responsive protein kinase 1 19 122 - -
Prci6g2897 394 Gene3D Phosphorylase Kinase; domain 1 21 122 - -
Prci6g2897 394 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 31 362 - -
Prci6g2897 394 SMART serkin_6 47 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci6g2897 394 Gene3D Transferase(Phosphotransferase) domain 1 123 331 - -
Prci6g2897 394 CDD STKc_IRAK 53 318 - -
Prci6g2897 394 Pfam Protein tyrosine and serine/threonine kinase 51 318 IPR001245 GO:0004672|GO:0006468
Prci6g2897 394 FunFam cold-responsive protein kinase 1 123 334 - -
Prci6g2897 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g2897 Prci-Chr6 41960028 41964618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g2897 35 387 Receptor kinase-like Gene Family AT1G53430 50.847 6.19e-112 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Prci6g2897 PK_Tyr_Ser-Thr 3.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g2897 - - sind:105176536 597.43