Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g2870 ATGGGTGATCATATGGAAGATTTGAGAAGCACAGAAGAGTATCTGGACGATGAAGTTGAACTTCCAGGGTTTCGATTCCATCCCACAGATGAGGAACTCGTGAGATTCTACCTCAGAAGGAAGCTTGACAAGAAACCCATCAGTATCGAACTCATCAAGCAGATCGACATTTACAAATACGACCCTTGGGATCTTCCAAAAGCTAGCTGGACGGGAGGAGAGAAGGAGTGGTACTTCTATTGCAGAAGAGGAAGGAAGTACAAGAACAGTGTGAGGCCGAATAGAGTGACAGGATCAGGGTTCTGGAAAGCAACAGGGATAGACAAGCCTGTGTATTCTCTCGGAGGGGAAGGCCATGACTGTATTGGCCTCAAGAAAACCCTCGTCTACTATCGTGGCTCTGCTGGCAAAGGCACCAAAACTGACTGGATGATGCATGAGTTTCGTCTTCCCTCAAACATTGACCCCACTAATATCAATGCCCAAGAAGCTGAAATTTGGACGCTCTGTAGAATTTTCAGAAGAGCTTCGACGCAGAGAAAGTGCACGCCAGATTGGACACACATGGTTGCGAAGCGTCGTTCCAGTGACAAGATCAATAGAAGATCGATGAGCATTAATAATAGCGGTGTGGAGTCTTGTAATAGTACTGTTACTTATGATCAAGAAGCGTATATCAACTTTGGAGGCAGCCCGGAGCAGAAACCTGTTGTTCATAATAACTACACGAGCAATCCTCATTATTATAATGATCAAAGGAATCATCACGTGAGCCATTTCAGCACTTCAGTATCAGCAGTGATGACACAGCAGCCTCATCCTCATCAGCAATTAACTACGTCGTCGTCACCATCATCAGCTCTGAACTTCTGGCAGGCTTCCAATGACCTGCTTAAATTTGAGAACTCATGGAATGAGCTTGAATCAGTCGTGCAATTTTGCTCTTGA 948 0.4515 MGDHMEDLRSTEEYLDDEVELPGFRFHPTDEELVRFYLRRKLDKKPISIELIKQIDIYKYDPWDLPKASWTGGEKEWYFYCRRGRKYKNSVRPNRVTGSGFWKATGIDKPVYSLGGEGHDCIGLKKTLVYYRGSAGKGTKTDWMMHEFRLPSNIDPTNINAQEAEIWTLCRIFRRASTQRKCTPDWTHMVAKRRSSDKINRRSMSINNSGVESCNSTVTYDQEAYINFGGSPEQKPVVHNNYTSNPHYYNDQRNHHVSHFSTSVSAVMTQQPHPHQQLTTSSSPSSALNFWQASNDLLKFENSWNELESVVQFCS 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g2870 315 Pfam No apical meristem (NAM) protein 22 150 IPR003441 GO:0003677|GO:0006355
Prci6g2870 315 ProSiteProfiles NAC domain profile. 20 175 IPR003441 GO:0003677|GO:0006355
Prci6g2870 315 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 20 270 - -
Prci6g2870 315 SUPERFAMILY NAC domain 17 174 IPR036093 GO:0003677|GO:0006355
Prci6g2870 315 MobiDBLite consensus disorder prediction 263 284 - -
Prci6g2870 315 FunFam NAC domain-containing protein 35 29 178 - -
Prci6g2870 315 Gene3D NAC domain 29 179 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g2870 Prci-Chr6 41671102 41672698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g2870 5 237 NAC Transcription Factor Family AT5G39820 48.627 2.11e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Prci6g2870 NAM 2.9e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g2870 - - gmx:100790471 355.525