Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g2843 ATGGGGAAAGGAAGAGCACCTTGCTGTGATAAAACTAAAGTCAAGAGAGGCCCATGGAGTCCTGAAGAAGACCTTAAGCTCATTACCTTCATTCACAAACATGGCCATGACAACTGGAGAGCTCTTCCTAAGCTCGCAGGATTGGTGAGATGTGGAAAAAGCTGTCGCTTGAGATGGATCAACTACTTGAGGCCTGATGTGAAGCGTGGCAATTTTTCTAAGGAAGAAGAGGACACCATTATAAACCTTCACCTTGCCTTAGGAAACAAGTGGTCAAAGATTGCATCTTATTTGCCTGGAAGAACAGACAATGAGATCAAGAATGTTTGGAACACACACCTCAAGAAAAGATTGAAACCCAAGACATCACAGTCTAACGTTGCTGATGTCTCATCATCCTCTGAATCATCTTCTTCCTCTGAAAAAATGGAGCAAGACTCAGAGAAACAAGCTGCTTCCAAGGAACCCATCAATGGCGTCACAGAGGACCCAAAAGAGTCACCAGCCTCGTTCTCTTCTTCTGATCACTCATCAAAACCAGAAGAGGAAGGACAGATTTTGGAGTCTTTGCTTAAAGACGATGATCCTCTGCTTCAAATCCCGATGGAAACGTTGGACCTTGACATCTGGAACATTCTGGAGAGTCCAGAATCCTTCCAATCAAGTGATTTCCAGGTCCCTAGTTCTTCTGAAGATGCAGACAACAACAAATGGTTTCGTGATTTAGAGAATGAACTTGGACTCGGAACGACAGCAGAGGGATTCAACCTAGCAAGGAATAATGTTGATGATGTAGACATGGCTTTTCTGGAATCACCATGGTCCTCTTGGCAAGAAATTTACAATCTTTAA 852 0.4343 MGKGRAPCCDKTKVKRGPWSPEEDLKLITFIHKHGHDNWRALPKLAGLVRCGKSCRLRWINYLRPDVKRGNFSKEEEDTIINLHLALGNKWSKIASYLPGRTDNEIKNVWNTHLKKRLKPKTSQSNVADVSSSSESSSSSEKMEQDSEKQAASKEPINGVTEDPKESPASFSSSDHSSKPEEEGQILESLLKDDDPLLQIPMETLDLDIWNILESPESFQSSDFQVPSSSEDADNNKWFRDLENELGLGTTAEGFNLARNNVDDVDMAFLESPWSSWQEIYNL 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g2843 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Prci6g2843 283 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Prci6g2843 283 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Prci6g2843 283 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 217 - -
Prci6g2843 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Prci6g2843 283 MobiDBLite consensus disorder prediction 121 140 - -
Prci6g2843 283 Gene3D - 70 155 - -
Prci6g2843 283 Gene3D - 15 68 - -
Prci6g2843 283 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Prci6g2843 283 FunFam Transcription factor RAX3 9 69 - -
Prci6g2843 283 CDD SANT 71 114 IPR001005 -
Prci6g2843 283 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Prci6g2843 283 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Prci6g2843 283 CDD SANT 18 63 IPR001005 -
Prci6g2843 283 SMART sant 15 65 IPR001005 -
Prci6g2843 283 SMART sant 68 116 IPR001005 -
Prci6g2843 283 MobiDBLite consensus disorder prediction 117 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g2843 Prci-Chr6 41156857 41160745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g2843 1 181 MYB Transcription Factor Family AT1G56160 66.667 9.61e-79 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci6g2843 Myb_DNA-binding 4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g2843 K09422 - gmx:100805511 275.789