Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g2820 ATGAACCTAGAAGCGAGTATCTTCCATGAAGCAACACCAGAAGAAGAACAAGTACCTGTCGCACCAGATTATAACTACAATAACCACCATCTTCTCCTTCCTTCTCATTATTGTCACTCACTCAAACCATACAGTAACTTTGTTTACCCTCATGAACTTCTTCCCTATGATCCCTTCATGTACGAGAATAACGATCGGTATGAAAGCCTGCTTCCATGTCCAAAACGACAGAAGTACTTGTCGTATGATCAGAGTTTGATGATGATGGACTTGATTGCACCAACAACGGATCATGGTTTCATGGATGGGAACAATATTGTTGTGCCGAGTGTTCCAGAGTTCTATTATGATGAGGTTGCGGTGGTGGGTAATAATGCAGAGAGTTTGGCGGTGGCGGAAGGAGGAGGGAGGAAGAAGAATGAGAAGATGACGGTGTCTGCGCAGAGCGTGGCGGCGAGGGAGAGGAGGAGAAGGATAACGGAGAAGACACAAGAGCTAGGAAGGCTGGTCCCTGGTGGCTCCAAGATGAACACAGCTGAGATGCTTCAGGCTGCTGCTAAGTATGTCAATTACTTGAATGCTCAAGTTGGGATGCTTCAACTCATCAACACACTTCAGGAAGACAAGGTATTCAGTGGGAGTGAAGAAATGCGGAAGCTGATTGGCTCTACAGTAGTAGAAGAGAAGATGTACATGGAAGAGAAGTGCTTTGTTCCAAAAGAGTTCATCATGGCCTTGAAAAATCATAAAGACATTCAATCAACACCTTCTATCCTTAACGATCTTAATCAATTCATTCCGACAGGCATTAAGAAAGAACAGTGA 825 0.4424 MNLEASIFHEATPEEEQVPVAPDYNYNNHHLLLPSHYCHSLKPYSNFVYPHELLPYDPFMYENNDRYESLLPCPKRQKYLSYDQSLMMMDLIAPTTDHGFMDGNNIVVPSVPEFYYDEVAVVGNNAESLAVAEGGGRKKNEKMTVSAQSVAARERRRRITEKTQELGRLVPGGSKMNTAEMLQAAAKYVNYLNAQVGMLQLINTLQEDKVFSGSEEMRKLIGSTVVEEKMYMEEKCFVPKEFIMALKNHKDIQSTPSILNDLNQFIPTGIKKEQ 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g2820 274 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 143 192 IPR011598 GO:0046983
Prci6g2820 274 Pfam Helix-loop-helix DNA-binding domain 151 192 IPR011598 GO:0046983
Prci6g2820 274 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 204 IPR036638 GO:0046983
Prci6g2820 274 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 137 237 IPR045843 GO:0003700|GO:0006355
Prci6g2820 274 SMART finulus 149 198 IPR011598 GO:0046983
Prci6g2820 274 Gene3D - 141 208 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g2820 Prci-Chr6 41092191 41094120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g2820 48 270 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 35.659 5.59e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci6g2820 HLH 4.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g2820 - - pcin:129313404 556.984