Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g2789 ATGAAGATGAAGAGGGGTGCCAAAGTCGTTGATGCCCTCGTCAGCGTCTTGTGTTGGTGTGTGATTCTGTGTGTGAGGCTTGGCGTCTCGCACAGCAACACAACAGTAGTGAAAGTGGGAGTTGTGGTTGATGTGTCCCTGCCAGCTGGCAGCATAGGATTGAGCTGCATTAACTTTTCCCTCTCCGACTTTTATGCCTCTCATTCTCATTACAAAACCAGGCTCCTCTTGCACCTCCGAGACCCCGGCTCAGACCTCATTACTGCAGCATCTCAAGTTGCAGATCTTATCAAAACAGAGGAAGTGCAAGCAATAATAGGACCATCAACATCAACGGAGGCCAACTTTGTGATCAGTCTTGGAGAGAGAGCCCATGTGCCCATTGTAACATTTTCGGCTACAAGTGCTTCTCTTGCTTCACTTCAAAGTCCATATTTCTTTCGAATCGCACAAGTTGATTCAGCTCAAGCAAATGCCATTGTCGCAATTGTCGAAGCTTTTGAATGGAAACAAGCGGTGCCGATTTACATAGACAACAACGATTATGGGACGGGGCTCATTCCCTTCTTAACCAATGCTCTGCAACAAGTGTATGTTCGAATTCCATATCTCTGTCGCATTTCCCCTTTAGCCACTATTGATGCCATTAGAGGAGAGCTCTACAAGCTGATGACCATGCAAACTAGAGTGTTCATTGTGCATGTATCTCCTGATCTCGGCTCTACTCTCTTCCCCATAGCTCAACAGATTGGAATGATGACCGAGGGCTACGTTTGGATCGTAACAGATGGATTGGCTAATGTGCTTAGCTCTCTAGATTCCTCTGTGATGGATTCAATGCGTGGTGTATTGGGTGTGAGGACCTATATTCCTGAAACAAAAGAGCTAGATGATTTTAAAGTTCGATGGAGAAGAAAATTCCTACAAGACAATCCAACCGAGGTTGATACTCATCTGAATGTTTTTGGATTATGGGCTTATGATGCAACTACTGCATTAGCCATGGCTGTTGAGAAGGTCGGAATCACCAAGCATGGCTTTCTCAAAAGTAATATTCAAAATCTTGGAGTTTCAATGAATGGTGAAATGCTACGTGAAGCTTTATCCAACACAAAATTTCAAGGCCTCAGTGGAGAGTTTACTATCGTGGATGGGCAATTAAAGGCATCGATGTTTGAGATAATAAATGTGATTGGTAGTGGAAAGAGGAGAATAGGATATTGGACATCATGGAATGGACTGGCTGGAAGCCTGGATTCATCTTCATACAAACTAGCATCCATTGTATGGCCAGGGGATCAAAACTTCGTTCCAAAAGGTTGGGCCATTCCAACACATGGCAAGAAGATGATGGTAGGAGTTCCAGTGAAAATCGAATACACTAAATTCGTGAAAGTAACTCGTGACCTAGTCACCAATAGAATCGAGGTCACTGGTTTTTGCATAGATTTTTTCAGGGCTGTTTTAGAAGAGCTGCCTTATGCTTTGCCATATAAGTTTATCCCTTTTGCTAAACCCAATGGCGAGAAAGCAGGAACATACAATGAGCTGATCAACCAAGTCTATTTGAAGAACTTGGATGCTGTGGTGGGGGATATCACAATCACAGCAAACAGGTCTAAATACGTGGATTTCACGTTGCCCTACACTGAATCTGGTGTAACAATGGTCGTTCCAACCAAAGACAACAGGAAGAAGAATGTATGGGTCTTCTTAAAGCCATTAACTTGGGATCTTTGGGTGACAACTGCTTGCTCTTTTGTATTCATTGGGTTTGTAGTGTGGGTGTTTGAACACCGAATAAACGAACATTTTCAAGGGCCTCTGTCCCATCAGATTGGCACCTCCTTATGGTTTTCTTTCTCAACCATAGTTTTTGCACAGAGAGAGAGAGTGACGAGCAACTGGAGTAGATTTGTGGTGATCATATGGTTCTTCGTGGTTCTAATTCTGGTTCAAAGCTACACTGCTAGTTTAATAACACTCCTAACAGTTGAGCAGCTTAGCCCAACTATAAGAGAAGTGAATTTACTCATAAAGAACAGAATGAATGTTGGTTACAAGAGAGGTTCATTTATACATGAAATCTTGAAGGAAATGGGTTTCCTTGATTCTCAGCTGAAGGCGTATAACTCAACAAAGGAATGCGTGGAACTATTCGAGAGAGGAAGTGCAAATGGAGGCATTGCTGCTGCGTTTGATGAAGTGCCATACGTGAAACTCTTTCTTCAAAGTTACTGCTCTAAGTATACCATGGTAGAGCCCACTATTAAAACCGGTGGCTTTAGCTTTGTGTTCCCCAAAGGATCTCCTCTTGTAGCTGAAATTTCAAGAGCAATATTGAACGTTACTCAAGGGTATAAAATGAAAGCCATAGAGAATGCATGGTTCAAGGAAAAAAGCTGTTATGGTTCTGATGCATCAGTTTCATCCAATAGTCTAGGACTTGAAAGCTTTTGGGGGCTATTTCTCATTGTAGGAGTTGCTTCTGGTCTAGCTCTCATTTTCTTTGCCATTAACTTCCTATATCAACATGAACATATTTGGTTGCATTATGATCCCGGGACATCCAGGTGGAAACGAATTGAGGGCTTGATAAGGATGTATTACCAGAAAGATCAAAGCTCTCACACTTTCAAAAAAAGGGAAATGCAAGATAAGAGTGGAACTCGTTGCCTGCATGATATAGTTGAAGTTGAGGCATCTCCAACTACATAA 2718 0.4242 MKMKRGAKVVDALVSVLCWCVILCVRLGVSHSNTTVVKVGVVVDVSLPAGSIGLSCINFSLSDFYASHSHYKTRLLLHLRDPGSDLITAASQVADLIKTEEVQAIIGPSTSTEANFVISLGERAHVPIVTFSATSASLASLQSPYFFRIAQVDSAQANAIVAIVEAFEWKQAVPIYIDNNDYGTGLIPFLTNALQQVYVRIPYLCRISPLATIDAIRGELYKLMTMQTRVFIVHVSPDLGSTLFPIAQQIGMMTEGYVWIVTDGLANVLSSLDSSVMDSMRGVLGVRTYIPETKELDDFKVRWRRKFLQDNPTEVDTHLNVFGLWAYDATTALAMAVEKVGITKHGFLKSNIQNLGVSMNGEMLREALSNTKFQGLSGEFTIVDGQLKASMFEIINVIGSGKRRIGYWTSWNGLAGSLDSSSYKLASIVWPGDQNFVPKGWAIPTHGKKMMVGVPVKIEYTKFVKVTRDLVTNRIEVTGFCIDFFRAVLEELPYALPYKFIPFAKPNGEKAGTYNELINQVYLKNLDAVVGDITITANRSKYVDFTLPYTESGVTMVVPTKDNRKKNVWVFLKPLTWDLWVTTACSFVFIGFVVWVFEHRINEHFQGPLSHQIGTSLWFSFSTIVFAQRERVTSNWSRFVVIIWFFVVLILVQSYTASLITLLTVEQLSPTIREVNLLIKNRMNVGYKRGSFIHEILKEMGFLDSQLKAYNSTKECVELFERGSANGGIAAAFDEVPYVKLFLQSYCSKYTMVEPTIKTGGFSFVFPKGSPLVAEISRAILNVTQGYKMKAIENAWFKEKSCYGSDASVSSNSLGLESFWGLFLIVGVASGLALIFFAINFLYQHEHIWLHYDPGTSRWKRIEGLIRMYYQKDQSSHTFKKREMQDKSGTRCLHDIVEVEASPTT 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g2789 905 Pfam Ligand-gated ion channel 799 829 IPR001320 GO:0015276|GO:0016020
Prci6g2789 905 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 37 874 IPR015683 -
Prci6g2789 905 FunFam Glutamate receptor 449 568 - -
Prci6g2789 905 Pfam Bacterial extracellular solute-binding proteins, family 3 476 798 IPR001638 -
Prci6g2789 905 Gene3D - 745 804 - -
Prci6g2789 905 Pfam Receptor family ligand binding region 56 399 IPR001828 -
Prci6g2789 905 FunFam Glutamate receptor 156 317 - -
Prci6g2789 905 PIRSF IGluLR_plant 7 900 IPR017103 -
Prci6g2789 905 SMART GluR_14 451 799 IPR001320 GO:0015276|GO:0016020
Prci6g2789 905 FunFam Glutamate receptor 568 698 - -
Prci6g2789 905 CDD GluR_Plant 448 797 - -
Prci6g2789 905 Gene3D - 318 451 - -
Prci6g2789 905 Gene3D - 154 317 - -
Prci6g2789 905 SUPERFAMILY Periplasmic binding protein-like II 425 800 - -
Prci6g2789 905 SUPERFAMILY Periplasmic binding protein-like I 33 442 IPR028082 -
Prci6g2789 905 FunFam Glutamate receptor 2.7 705 804 - -
Prci6g2789 905 CDD PBP1_GABAb_receptor_plant 49 414 IPR044440 -
Prci6g2789 905 Gene3D - 452 567 - -
Prci6g2789 905 Gene3D - 568 697 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g2789 Prci-Chr6 40535064 40539509 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g2789 16 905 Ion Channels AT2G29120 50.497 0.0 869
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g2789 K05387 - qsa:O6P43_019170 1131.7