Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g2788 ATGACCATGATCGAAGCTCTGATATTGAAGATGAAGACGAAGAGGGGTGCTAAAGTCGTTGATGCCCTCGTCAGCGTCTTGTGTTGGTGTGTGATTCTGTGTGTGAAACTGGGAGTCTCACACAGCAACACAACACGGGTGAAAGTGGGAGTTGTGGTTGATGTGTCCCTACCAGCTGGCAACATAGGATTGAGCTGCATTAACATTTCCCTCTCCGACTTTTATGCCTCTCATTCTCATTACAAAACCAGGCTGCTCTTCCACCTCCGAGACTCCGGCTCAGACATCGTTACTGCAGCATCTCAAGCTGCAGATCTAATCAAAACAGAGGAAGTGCAAGCCATAATAGGACCATTAACATCAGCGGAGGCCAATTTTGTGATCAGTCTTGGAGATAGAGCTCATGTGCCCATCGTAACATTTTCAGCTACAAGTGCTTCTCTTGCTTCACTTCGAAGTCCATATTTCTTTCGAATCGCACAAGTTGATTCAGCTCAAGCAAAAGCCATTGTCGCAATTGTTGAAGCTTTTGAGTGGAAACAAGTGGTGCCCATTTACATAGACGACAACGATTATGGGATGGGGCTCATTCCCTTCTTAACTGATGCTCTGCAGCAAGCGTATGTTCGAATTCCATATCTCTGTCGCATTTCCCCTTTGGCCACTATTGACGCCATTAGAGGAGAGCTGTACAAACTGATGACTATGCAAACCAGAGTGTTCATTGTCCATGTATCTCCTGATCTCGGCTCTACTCTCTTCCCCATAGCTCAACAGATTGGAATGATGACCGAGGGCTACGTTTGGATCGTAACAGATGGATTGGCTAATGTGTTTAGCTCTCTGAATTCCTCTGTGATGGATTCAATGCGGGGTGTATTAGGTGTGAGAACCTATATTCCTGAAACAAAAGAGCTAGACAATTTCAAAGTTCGATGGAGAAGAAAATTCCTACAAGACAATCCAACAGAGGTTGATACTCATCTGAATGTTTTTGGATTATGGGCTTATGATGCAACAACTGCATTAGCCATGGCTGTCGAGAAGGCTGGAATCACCAAGCAAGGGTTTCTCAAAAGTAATATTCAAAATCTTGGAGTTTCAACGAATGGTGAAATGCTACGTGAAGCTTTATCCAAAATAAAATTCCAAGGCCTCAGTGGAGAGTTTACTATCGTGGATGGGCAATTAAAGGCATCGGTGTTTGAGATAATAAATGTGATTGGTAGTGGAGAGAGGAGAATAGGATTTTGGACATCATGGAATGGACTGGTTGGAAGCCTGGATTCATCTTCATACAAACTAGCATCCATTGTATGGCCAGGGGATCAAAACTTTGTTCCAAAAGGTTGGGCCATTCCAACACATGGCAAGAAGATGAGGATAGGAGTTCCAGTGAGAAACGAATATACTGAATTCGTCAAAGTAACTCGTGACCCAGTCACCAATAGAACCAAGGTCACTGGTTTTTGCATAGATATGTTTAAGGCTGTGTTAGAAGAGCTGCCTTATGCTTTGCCATATAAGTTTATCCCTTTTGCTAAACCCAATGGTGAGAAAGCAGGAACATATAATGACCTGATCAACCAAGTCTATTTGAGGAACTTGGATGCTGTGGTAGGGGATATCACAATCACAGCAAACAGGTCTAAATACGTGGATTTCACGTTTCCCTACACTGAATCTGGTGTAACAATGGTCGTTCCCACGAAAGACAACAGGAAGAAGAATGCATGGGCCTTCTTAAAGCCATTAACTTGGGATCTTTGGGTGACAACTGCTTGCTCTTTTGTATTCATTGGGTTTGTAGTGTGGGTGTTTGAACACCGAATAAACGAACATTTTCGGGGGACTCCATCGCATCAGATTGGCACCTGCTTATGGTTTTCTTTCTCAACCATAGTTTTTGCACAGAGAGAGAGAGTGATGAGCAATTGGAGTAGATTTGTGGTGATCATATGGTTCTTCGTGGTTCTAGTTCTGGTTCAAAGCTACACTGCTAGTTTAACAGCACTTTTGACAGTTGAGCAGCTTAGCCCAACTATAAGAGAAGTAGATTTACTCATAAAGAACAGAATGAATGTTGGTTATAAGAGAGGTTCATTTATACATGAAATCTTGAAGGAAATGGGTTTCCTTGATTCTCAGCTGAAGGCGTATAACTCAACAAAGGAATGCGTCGAACTATTCGAGAGAGGAAGTGCAAATGGAGGCATTGCTGCTGCATTTGATGAAGTGCCATATGTGAAACTCTTTCTTCAAAGTTACTGCTCTAGGTATACCACGATGGAGCCAACTATTAAAACCGGTGGCTTTAGCTTTGTGTTCTCTAAAGGATCTCCTCTTGTAGCTGAAATTTCAAGAGCAATATTGAACGTTACTCAAGGGGATAAAATGAAAGCCATAGAGAATGCATGGTTCAAGGAAAAAAACTGCTTCGATTCTGATACATCAGTTTCATCCAACAGTTTAGGACTTGAAAGCTTCTGGGGGCTATTTCTTATTGTAGGGGTTGCTTCTAGTCTAGCTCTCATTTTCTTTGTCATTAACTTCCTATATCAACATGAACATATTTGGTTGCATCATGATCCCGGGACATCCAGGTGGAAACGAATTGAGGGCTTGATAAGGATCTACTACCAGAAAGATCAAAGCTATTACACATCCAAAAAGAGGGAAATGCAAAATAAGAGTGGAACTTGTTGCATGCATGATATAGTTGAAGTTGAGGCATCTCCAACTACAGAATGCACCCCAAGTCCAAGTAGCCTTTCACCTCAAGAACCACAAGGCTGA 2796 0.4238 MTMIEALILKMKTKRGAKVVDALVSVLCWCVILCVKLGVSHSNTTRVKVGVVVDVSLPAGNIGLSCINISLSDFYASHSHYKTRLLFHLRDSGSDIVTAASQAADLIKTEEVQAIIGPLTSAEANFVISLGDRAHVPIVTFSATSASLASLRSPYFFRIAQVDSAQAKAIVAIVEAFEWKQVVPIYIDDNDYGMGLIPFLTDALQQAYVRIPYLCRISPLATIDAIRGELYKLMTMQTRVFIVHVSPDLGSTLFPIAQQIGMMTEGYVWIVTDGLANVFSSLNSSVMDSMRGVLGVRTYIPETKELDNFKVRWRRKFLQDNPTEVDTHLNVFGLWAYDATTALAMAVEKAGITKQGFLKSNIQNLGVSTNGEMLREALSKIKFQGLSGEFTIVDGQLKASVFEIINVIGSGERRIGFWTSWNGLVGSLDSSSYKLASIVWPGDQNFVPKGWAIPTHGKKMRIGVPVRNEYTEFVKVTRDPVTNRTKVTGFCIDMFKAVLEELPYALPYKFIPFAKPNGEKAGTYNDLINQVYLRNLDAVVGDITITANRSKYVDFTFPYTESGVTMVVPTKDNRKKNAWAFLKPLTWDLWVTTACSFVFIGFVVWVFEHRINEHFRGTPSHQIGTCLWFSFSTIVFAQRERVMSNWSRFVVIIWFFVVLVLVQSYTASLTALLTVEQLSPTIREVDLLIKNRMNVGYKRGSFIHEILKEMGFLDSQLKAYNSTKECVELFERGSANGGIAAAFDEVPYVKLFLQSYCSRYTTMEPTIKTGGFSFVFSKGSPLVAEISRAILNVTQGDKMKAIENAWFKEKNCFDSDTSVSSNSLGLESFWGLFLIVGVASSLALIFFVINFLYQHEHIWLHHDPGTSRWKRIEGLIRIYYQKDQSYYTSKKREMQNKSGTCCMHDIVEVEASPTTECTPSPSSLSPQEPQG 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g2788 931 Gene3D - 756 814 - -
Prci6g2788 931 FunFam Glutamate receptor 459 578 - -
Prci6g2788 931 Gene3D - 460 577 - -
Prci6g2788 931 CDD GluR_Plant 458 807 - -
Prci6g2788 931 Gene3D - 76 167 - -
Prci6g2788 931 Gene3D - 168 329 - -
Prci6g2788 931 FunFam Glutamate receptor 578 708 - -
Prci6g2788 931 Pfam Receptor family ligand binding region 67 409 IPR001828 -
Prci6g2788 931 MobiDBLite consensus disorder prediction 913 931 - -
Prci6g2788 931 CDD PBP1_GABAb_receptor_plant 59 424 IPR044440 -
Prci6g2788 931 Pfam Bacterial extracellular solute-binding proteins, family 3 484 808 IPR001638 -
Prci6g2788 931 SMART GluR_14 461 809 IPR001320 GO:0015276|GO:0016020
Prci6g2788 931 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 47 884 IPR015683 -
Prci6g2788 931 PIRSF IGluLR_plant 17 928 IPR017103 -
Prci6g2788 931 MobiDBLite consensus disorder prediction 912 931 - -
Prci6g2788 931 FunFam Glutamate receptor 162 318 - -
Prci6g2788 931 Gene3D - 578 708 - -
Prci6g2788 931 Gene3D - 331 459 - -
Prci6g2788 931 SUPERFAMILY Periplasmic binding protein-like I 46 442 IPR028082 -
Prci6g2788 931 SUPERFAMILY Periplasmic binding protein-like II 435 810 - -
Prci6g2788 931 Pfam Ligand-gated ion channel 809 839 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g2788 Prci-Chr6 40521260 40526562 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g2788 26 923 Ion Channels AT2G29120 50.875 0.0 891
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g2788 K05387 - qsa:O6P43_019170 1124.77