Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g2777 ATGGCAGAGAAAAAGAGAGAGGTCAGACCAAATTCTCATGTCAGCTCAAAAGGGAGAGAGAAATTGAGATTGGTCATGGCCATGCATGGTATTGCTAGCTGCAGCAAACAGAAGATGAAGAGAGGACTGTGGTCTCCTGAAGAAGATGAGAAGCTTATCAGATTTATCAGCATCCATGGTCACAATAATTGGAGTTCTGTCCCTACGCTTGCAGGCTTGCAGAGATGTGGAAAGAGTTGCAGATTGAGATGGATGAATTATCTGAGACCAGGCCTTAAGAAGAGCTCCTTTACTTCAGAAGAAGAGCAGGTTATCATCGATGTTCATAGGATTCTGGGAAACAGATGGGCCCAAATAGCGAAGCACCTTCCCGGAAGAACTGACAATGAGATCAAGAATTTCTGGAACTCTTTCATCAAGAAGAAGTTCCTATCTCATGGCTTGAACCCTCAAACTCAAACTCACACTCTTCTCTCTTCTTCTTCTTCTTCTTCTTCTTCTGCTTCTGCTTTTCATAAAACAGAAACTTCTGCAGCATCATGCGATATCTCAGTCTCATATGGTATTCATTCGAACAATCCCAATTCCTTCAGTTTCATTCCCATGGAAGCACGCAGTGTACCTTGTTCTTCACTAGTCCCTAAAGCTCAGCCTCTACCAATTTTTAATGAGCAAGCTGTTTCCAGTATTATTTCTAATCATAACTATGACTGTAATCAACACTCTCATCAATTCTCAGCTTGCCCTTCTGAATTATCAATGGAAAACACACTCAGCAATGTTTCTTCTTCTTGCATAAACCCATCTGAGGTTGCACTTTCCGATAATTTTAGAGCTGAGCCATGGGAAAAAGCAGTGGAATTAGGACACGTGGTTCAGCAAGAGAAGGGAGCTATTGAAGTGAATAATATTGATTGTCTTGAGGGGGCAAACGTTGATCTTTACATGATGGAGAGTATACTTGCATCTGAATTCATGTCTGAAGATCCCAGCTTTATGGATGAGTTTGCCTGGAACTTTTAA 1023 0.4145 MAEKKREVRPNSHVSSKGREKLRLVMAMHGIASCSKQKMKRGLWSPEEDEKLIRFISIHGHNNWSSVPTLAGLQRCGKSCRLRWMNYLRPGLKKSSFTSEEEQVIIDVHRILGNRWAQIAKHLPGRTDNEIKNFWNSFIKKKFLSHGLNPQTQTHTLLSSSSSSSSSASAFHKTETSAASCDISVSYGIHSNNPNSFSFIPMEARSVPCSSLVPKAQPLPIFNEQAVSSIISNHNYDCNQHSHQFSACPSELSMENTLSNVSSSCINPSEVALSDNFRAEPWEKAVELGHVVQQEKGAIEVNNIDCLEGANVDLYMMESILASEFMSEDPSFMDEFAWNF 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g2777 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 36 92 IPR017930 -
Prci6g2777 340 SUPERFAMILY Homeodomain-like 38 135 IPR009057 -
Prci6g2777 340 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 34 - -
Prci6g2777 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 93 143 IPR017930 -
Prci6g2777 340 PANTHER MYB DOMAIN PROTEIN 55 32 265 - -
Prci6g2777 340 Gene3D - 96 142 - -
Prci6g2777 340 ProSiteProfiles Myb-like domain profile. 36 88 IPR001005 -
Prci6g2777 340 Pfam Myb-like DNA-binding domain 41 88 IPR001005 -
Prci6g2777 340 Pfam Myb-like DNA-binding domain 94 137 IPR001005 -
Prci6g2777 340 CDD SANT 96 139 IPR001005 -
Prci6g2777 340 FunFam Myb transcription factor 96 143 - -
Prci6g2777 340 CDD SANT 44 88 IPR001005 -
Prci6g2777 340 FunFam MYB transcription factor 38 94 - -
Prci6g2777 340 SMART sant 40 90 IPR001005 -
Prci6g2777 340 SMART sant 93 141 IPR001005 -
Prci6g2777 340 Gene3D - 38 94 - -
Prci6g2777 340 ProSiteProfiles Myb-like domain profile. 89 139 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g2777 Prci-Chr6 40397598 40398899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g2777 19 160 MYB Transcription Factor Family AT3G12720 71.127 8.83e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci6g2777 Myb_DNA-binding 6.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g2777 K09422 - gmx:100791209 270.781