Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g2776 ATGGCTCCAATGAGTTTACCGCCTGGATTTCGGTTCCATCCAACAGATGAAGAACTTGTTTCTTACTACCTCGAAAGAAAACTAACAGGCCGCTCCATAGAGCTTGAGATAATCCCTGAAGTTGATCTCTACAAACATGAACCTTGGGATTTGCCAGAAAAGTCATTGTTGCCAAGTAAAGATATGGAGTGGTACTTCTACAGTCCAAGGGATAGAAAGTATCCAAATGGGTCAAGAACTAATAGGGCAACAAGGGCTGGTTATTGGAAAGCTACAGGGAAAGACAGGCCAGTGAAGACTTCTGAAAAGCGACGTGTTGGGGTGAAGAAGACGTTGGTGTACTACAGGGGTAGAGCTCCTCGTGGCATAAGAACCAACTGGGTTATGCATGAGTATCGCCTCATTGATTCTGAACCTGCAAGTGTTTTCTCTTCTTTAAAGGAATCTTATTCATTGTGTCGCGTGTTCAAGAAGACGACGATCCAAACCTCGGAAGCACCTAAAGAAGAAGGAAAAAGTAATAAGGAAGCGAAGAAGGAATCAGTACCAGAAGAGGAAGATGATGAGAAAGTTGTAAATCATGATCATGACAATGAACCCCCTAATTGTGATGCTTCTTCTTCGGATCTCACTCAAGGAACACCCACTGAAACTGGTATGGAAGATGATTTTCAAGCACAGTTCGCTTGTGATGGAGCAAACACCGCAGCTAATACTTATTCTATGGGCAAAAAGGTGGACCCATCAAATCTGTTTCAGGATATAGAGGTACCTAAATATGGAAGCATGAACGAAGAATTTGCCGCACACACAGTACCTTTGGAGCATTTGGAGATGGAAGATTTGCCTCAAACAGATTTGGCAGAGACACAGCCATTGCTAATGAAGCCTGAAATGATGAGTAGCCATTGCATTATATATGATAAATACAATAAGGACTGTTCCTATGGAACTTTGGAAGAGGTTATTTCACGGCGTTTCTCTCATGATATACAATTTTAG 1002 0.4212 MAPMSLPPGFRFHPTDEELVSYYLERKLTGRSIELEIIPEVDLYKHEPWDLPEKSLLPSKDMEWYFYSPRDRKYPNGSRTNRATRAGYWKATGKDRPVKTSEKRRVGVKKTLVYYRGRAPRGIRTNWVMHEYRLIDSEPASVFSSLKESYSLCRVFKKTTIQTSEAPKEEGKSNKEAKKESVPEEEDDEKVVNHDHDNEPPNCDASSSDLTQGTPTETGMEDDFQAQFACDGANTAANTYSMGKKVDPSNLFQDIEVPKYGSMNEEFAAHTVPLEHLEMEDLPQTDLAETQPLLMKPEMMSSHCIIYDKYNKDCSYGTLEEVISRRFSHDIQF 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g2776 333 ProSiteProfiles NAC domain profile. 6 158 IPR003441 GO:0003677|GO:0006355
Prci6g2776 333 SUPERFAMILY NAC domain 3 158 IPR036093 GO:0003677|GO:0006355
Prci6g2776 333 FunFam Nac domain-containing protein 86 15 161 - -
Prci6g2776 333 Gene3D NAC domain 15 162 IPR036093 GO:0003677|GO:0006355
Prci6g2776 333 MobiDBLite consensus disorder prediction 164 202 - -
Prci6g2776 333 MobiDBLite consensus disorder prediction 203 219 - -
Prci6g2776 333 MobiDBLite consensus disorder prediction 164 219 - -
Prci6g2776 333 Pfam No apical meristem (NAM) protein 7 134 IPR003441 GO:0003677|GO:0006355
Prci6g2776 333 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g2776 Prci-Chr6 40393274 40396312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g2776 1 324 NAC Transcription Factor Family AT1G54330 48.955 9.87e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Prci6g2776 NAM 1.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g2776 - - gmx:100808325 419.468