Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g2730 ATGCCAGCGTTGTTCTCTGCACGGTTGGTTCTGCTAGTTGGAGAGACACTGCCCTTGCAAAGGTTCTTCTTGCCTGCTTCTAGGACAGCTTGTTTGCATAGTGGTGTCCGTCCTCTAAGTCAGATAGAGCCCCAACATGCTCTGCTTACTCCATTAAGCATCGGTTTGAATAATGAAAATGACACTAGGAAGAATAACAAAGCCAATAAACTGAAGCAATCGGGTTCCTCCTCTATATCCTCAAAGAGCAGAGCAAAGACCATTCGTATCAATGACATTAAAGCAGTTGGAGCCACAAAGAAGCAGCAGATAGAGTCTGCTCCGTTTGCGGCTAAGTCTTTTTCTGAACTTGGCCTCCCTCATTTGTTGCTTGAGAGATTAGAAAATGAAGGCTTCACGGTTCCAACTGAAGTGCAGTCTGCAGCAATTCCTACAATTTTGAATAATCATGATGTCATAATTCAATCTTACACAGGATCAGGGAAAACATTGGCTTATCTTCTCCCCATACTATCTAATGTTGGCCCATTGAGGAACAAGACTTCTGAAAGCAACAGTGATGGTGAGCCTGGAAGGAAAATGGGAATAGAAGCTGTAGTTGTTGCTCCTTCTAGGGAGCTGGGTATGCAAATAGTGAGGGAGTTTGAGAAGATACTTGGACTTGCTAACAAAAAGGCGGTTCAACAGCTTGTGGGAGGTGCAAATAGATCCAGGCAGGAAGAAGCTCTCAAGAAAAATAAACCTGCCATTGTTGTTGGCACACCTGGTAGAATAGCAGAGCTCAGTGCAGCCGGGAAACTTCACACTCATGGCTGTCGTTACCTGGTCCTAGATGAAGTTGATGAACTCTTGTCATTTAACTTTCGGGAGGATTTGCACCGGATACTAGAACATGTTGGGAGAAGATCAGGTGCTGACCCACGCGCACAAAATAGTACAGTTCCTAGACGATCAGAGCGTCAAACAATTATGGTGTCTGCAACGGTTCCATTTTCTGTTGTCAGGGCAGCCCGGAGCTGGGGGCATGAACCCCTTCTTGTCCAAGCCAATAAAGTTGGCCTGCTTGAAACCATTTCTCCTTCCAAACCTGTCAATTTATCAGGATCTGCGCCTAGCTCTAATTCTAACTCTACGACCCTTACGCAGGCAGCAGAGAGTCTACCTCCTGCATTAAAACACTATTATTGTGTCACAAAGTTACAGCATAAAGTTGATACCTTGAGAAGGTGTATTCATGCGCTAGATGCCAAATTTGTTATAGCTTTCATGAACCAAATCAAGCAACTTAAGGATGTTGTCTTCAAGCTAGAGGCACGTGGGATGAAAGCTGCAGAGTTACATGGGGATCTTGGGAAACTTGCTCGGTCAACAACTCTGAAAAAGTTCAAGAATGGTGAGGTGAGAGTGCTTGTGACCAATGAATTATCAGCACGGGGATTGGATGTGGCAGAGTGTGATCTCGTGGTTAATCTGGACTTACCCACAGACTCGATTCACTATGCACACCGAGCTGGCAGGACAGGGCGGCTCGGGAGGTCTGGTACAGTGCTTTCAATCTGTGAAGAGCCAGAAGTGTTTGTTGTGAAGAAACTGCAAAAGCAGCTTGGGATGCCAATAGCGTGCTGTGATTTTGTGGAGGGAAAGCTACTTGTTAAAGAAGAAGAAAAAATGTTAAATGCTATGAGATGA 1689 0.4506 MPALFSARLVLLVGETLPLQRFFLPASRTACLHSGVRPLSQIEPQHALLTPLSIGLNNENDTRKNNKANKLKQSGSSSISSKSRAKTIRINDIKAVGATKKQQIESAPFAAKSFSELGLPHLLLERLENEGFTVPTEVQSAAIPTILNNHDVIIQSYTGSGKTLAYLLPILSNVGPLRNKTSESNSDGEPGRKMGIEAVVVAPSRELGMQIVREFEKILGLANKKAVQQLVGGANRSRQEEALKKNKPAIVVGTPGRIAELSAAGKLHTHGCRYLVLDEVDELLSFNFREDLHRILEHVGRRSGADPRAQNSTVPRRSERQTIMVSATVPFSVVRAARSWGHEPLLVQANKVGLLETISPSKPVNLSGSAPSSNSNSTTLTQAAESLPPALKHYYCVTKLQHKVDTLRRCIHALDAKFVIAFMNQIKQLKDVVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRSGTVLSICEEPEVFVVKKLQKQLGMPIACCDFVEGKLLVKEEEKMLNAMR 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g2730 562 Pfam Helicase conserved C-terminal domain 406 511 IPR001650 -
Prci6g2730 562 SMART ultradead3 131 358 IPR014001 -
Prci6g2730 562 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 531 IPR027417 -
Prci6g2730 562 Pfam DEAD/DEAH box helicase 136 333 IPR011545 GO:0003676|GO:0005524
Prci6g2730 562 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 71 549 - -
Prci6g2730 562 CDD SF2_C_DEAD 391 520 - -
Prci6g2730 562 MobiDBLite consensus disorder prediction 69 83 - -
Prci6g2730 562 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 406 550 IPR001650 -
Prci6g2730 562 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 112 140 IPR014014 GO:0003724
Prci6g2730 562 SMART helicmild6 430 511 IPR001650 -
Prci6g2730 562 MobiDBLite consensus disorder prediction 56 83 - -
Prci6g2730 562 CDD DEADc 123 348 - -
Prci6g2730 562 Gene3D - 67 350 IPR027417 -
Prci6g2730 562 Gene3D - 388 545 IPR027417 -
Prci6g2730 562 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 143 347 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g2730 Prci-Chr6 39496680 39500553 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g2730 113 545 Eukaryotic Initiation Factors Gene Family AT3G19760 24.374 2.92e-41 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g2730 - - gmx:100812968 786.178