Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g2729 ATGTCTACCACCACAACCGCTGCCGCTCCTCCGCGCCAGCTCTCCCAGAAAGAGGCTGACATACAGATGATGTTGGCCGCCGAGGTCCACCTCGGAACCAAAAATTGCAACTTCCAAATGGAGCGATATGTGTTCAAGCGCCGCAATGATGCTATCTACATCATCAATCTTGGAAAGACATGGGACAAGCTTATGCTTGCTGCCAGGGTTATTGTTGCCATTGAGAACCCTCAAGATATTATTGTTCAATCTGCTAGGCCTTATGGCCAAAGAGCTGTTCTCAAGTTTGCTCAATACACTGGTGCCCATGCACTTGCTGGGAGACACACTCCAGGAACCTTCACTAATCAGCTCCAGACCTCGTATAGTGAGCCTCGCCTTCTAATTCTAACCGATCCAAGGACTGACCATCAGCCCATCAAGGAAGCTGCTCTTGGAAATATACCAACTATTGCTTTTTGTGACACTGATTCACCTATGCGATATGTTGATATTGGGATTCCTGCCAACAACAAGGGGAAACATAGCATTGGTTGTCTGTTTTGGCTTTTAGCAAGGATGGTACTGCAGATGCGTGGTACTATCCGTCCAGGGCACAAGTGGGATGTGATGGTGGATTTATTCTTCTATAGAGAACCTGAAGAGACCAAGCAACTAGAGGAAGAGGAGGCACCTCCTGTCCAAGATTATGCTGCTGCAGATTTCGGTGCTGGTATTGGTGCCATTGCTGATGGCCAGTGGCCTGTTGCAGCTGAACAATCATGGACTGACACAGTTCCACAACCTATTCCAGCAGCTCCTGCTGCCAGCTGGACCCCAGAAGCTGGGGATTGGGGTGAAGCTGCTCCTGCTCCACCAGTTCCTGTTCCTGCAGGGGATTGGGGTGAAGCTGTTCCTGCTCCACAAGTTCCTCTTCCTGGAACTGAACACGTTACTGCTACTGGTTGGGAGTAA 954 0.4969 MSTTTTAAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDAIYIINLGKTWDKLMLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHALAGRHTPGTFTNQLQTSYSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEETKQLEEEEAPPVQDYAAADFGAGIGAIADGQWPVAAEQSWTDTVPQPIPAAPAASWTPEAGDWGEAAPAPPVPVPAGDWGEAVPAPQVPLPGTEHVTATGWE 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g2729 317 Hamap 40S ribosomal protein SA [rps-0]. 8 281 IPR027498 GO:0003735|GO:0006412|GO:0015935
Prci6g2729 317 FunFam 40S ribosomal protein SA 20 226 - -
Prci6g2729 317 Gene3D - 20 225 - -
Prci6g2729 317 PRINTS Ribosomal protein S2 signature 125 142 IPR001865 GO:0003735|GO:0005840|GO:0006412
Prci6g2729 317 PRINTS Ribosomal protein S2 signature 51 60 IPR001865 GO:0003735|GO:0005840|GO:0006412
Prci6g2729 317 PRINTS Ribosomal protein S2 signature 163 177 IPR001865 GO:0003735|GO:0005840|GO:0006412
Prci6g2729 317 PRINTS Ribosomal protein S2 signature 21 39 IPR001865 GO:0003735|GO:0005840|GO:0006412
Prci6g2729 317 PRINTS Ribosomal protein S2 signature 142 153 IPR001865 GO:0003735|GO:0005840|GO:0006412
Prci6g2729 317 PRINTS Ribosomal protein S2 signature 100 117 IPR001865 GO:0003735|GO:0005840|GO:0006412
Prci6g2729 317 NCBIfam 30S ribosomal protein S2 16 212 IPR005707 GO:0003735|GO:0006412|GO:0015935
Prci6g2729 317 CDD RPS2 24 190 IPR001865 GO:0003735|GO:0005840|GO:0006412
Prci6g2729 317 ProSitePatterns Ribosomal protein S2 signature 1. 21 32 IPR018130 GO:0003735|GO:0005840|GO:0006412
Prci6g2729 317 Pfam Ribosomal protein S2 122 188 IPR001865 GO:0003735|GO:0005840|GO:0006412
Prci6g2729 317 Pfam Ribosomal protein S2 24 119 IPR001865 GO:0003735|GO:0005840|GO:0006412
Prci6g2729 317 PANTHER 40S RIBOSOMAL PROTEIN SA 11 290 IPR005707 GO:0003735|GO:0006412|GO:0015935
Prci6g2729 317 ProSitePatterns Ribosomal protein S2 signature 2. 125 149 IPR018130 GO:0003735|GO:0005840|GO:0006412
Prci6g2729 317 MobiDBLite consensus disorder prediction 259 317 - -
Prci6g2729 317 SUPERFAMILY Ribosomal protein S2 16 206 IPR023591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g2729 Prci-Chr6 39472196 39475399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g2729 8 294 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 74.048 2.25e-152 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g2729 K02998 - gmx:100805318 496.893