Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g2708 ATGCCAGGAAGTGGACAAGTGAGAGTTCCTCCAGGTTTCCGGTTTCACCCAACTGATGAGGAACTGCTTTACTATTACCTGAGAAAGAAGGTCTCTTATGAAGCCATTGACCTTGACGTCATCAGAGAAGTCGATCTTAACAAACTTGAGCCTTGGGATCTCAAAGAGAAGTGCAGAATTGGATCAGGGCCACAGAACGAGTGGTATTTCTTCAGCCACAAGGACAAGAAGTATCCGACAGGAACGAGAACAAATAGGGCAACCACAGCTGGGTTTTGGAAAGCCACAGGGAGGGACAAGGCCATTTATGTCACTAATTCCAAGAGGATTGGCTTGAGAAAAACCCTTGTCTTCTACACTGGTCGTGCTCCTCACGGCCAAAAGACTGACTGGATCATGCATGAGTATCGTCTTGATGAAGAATACGACCTCCACGTTCAGGAAGATGGGTGGGTAGTGTGCAGGGTTTTCAAGAAGAAGAACCTGAATAGAGGTTGCCAAGCAACAGAAATGGAAGAGGAAGAGTACTTAGCAACACAAATGATGAGAACAAAAAGTAGATCAACCCATCAGCAGGTATTAGACCCAAAACAGCACTATCATCATCATCTTCATCACATGCAAGCACTATATGATCATAACTATAGCCTTGATGGATCAATCCAGCATCTACCCCAATTGCTCAGTCCTGATCAACCTGCAGTATTACCCGCCACTACTTCCATGGACGAAGTAGTCCAGTGCTCTCAGAACTTGTTGAGGCTCACAGGCACAAGTGGGGGTAGTGCCTGCACTGGATTAAATCTCAATCTCAATAATTACAATGAAGATCACTGGTCATTCTTGGACAAGCTTCTTGCTTCTCACCACCAGAGATTCTTGCCTGCACATGATCATCATCATCATGCTGGTGTGGCTGCTTCAACCCAGAAATTCCCAGCTGTTCATCATTACCTTGGTTGTGACACTCGTGACATTCTCAGGTTCTCTAAGTAG 996 0.4548 MPGSGQVRVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNKLEPWDLKEKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYVTNSKRIGLRKTLVFYTGRAPHGQKTDWIMHEYRLDEEYDLHVQEDGWVVCRVFKKKNLNRGCQATEMEEEEYLATQMMRTKSRSTHQQVLDPKQHYHHHLHHMQALYDHNYSLDGSIQHLPQLLSPDQPAVLPATTSMDEVVQCSQNLLRLTGTSGGSACTGLNLNLNNYNEDHWSFLDKLLASHHQRFLPAHDHHHHAGVAASTQKFPAVHHYLGCDTRDILRFSK 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g2708 331 FunFam NAC domain-containing protein 18 163 - -
Prci6g2708 331 Gene3D NAC domain 18 163 IPR036093 GO:0003677|GO:0006355
Prci6g2708 331 Pfam No apical meristem (NAM) protein 10 138 IPR003441 GO:0003677|GO:0006355
Prci6g2708 331 ProSiteProfiles NAC domain profile. 9 159 IPR003441 GO:0003677|GO:0006355
Prci6g2708 331 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 207 - -
Prci6g2708 331 SUPERFAMILY NAC domain 5 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g2708 Prci-Chr6 39296547 39300428 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g2708 1 288 NAC Transcription Factor Family AT1G79580 57.321 4.09e-113 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Prci6g2708 NAM 8.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g2708 - - qsa:O6P43_029444 429.483