Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g2646 ATGGCTTTATCCTCTTCCCTTTTCTCACCACCCCATCTTCTTTCCAATCACACTACAAAATCCATTTCAACCGCTTCCAGATTCTCTATTCACCTTCTGAAATCTTCCCATTCACAACCCTTTGTCAAATCTACGCCTTCTCTGGCAGTTCCAACACCCAGACACTTCCAGAGACCCTTTGCTGTTGCAGAAGATACTGCAGTCACTTCTTCACCTGACCCGAAATCCGAGGCCGCGAGGAAGCTCTACATTGGGAACATTCCTCGCGATATCGATAACAGTGAGCTTACCCGGATTGTTGAAGAGCATGGCGCTGTTGAGAGAGCGGAGGTTATGTATGACAAGTACTCTGGAAGGAGTCGTCGCTTTGCATTTGTTACAATGAAGACAGTTGAGGATGCAAATTCAGTAATCGAGAAACTAAATGGCACTGAAATCGGAGGGCGTGAAGTCAAAGTAAATATAACAGAAAAACCTTTGCCAACAGTTGATCTATCCATTCTCCAGGCAGAGGATTCTGAATTCGTTGACAGTCCCCACAAAGTATATGTAGGAAATCTTGCAAAGACAGTAACAACAGATGTACTAAAAGACTTCTTCTCTTCAAATGGAAATGTTCTTAGTGCCAAGGTTTCACGTGTTCCTGGGACCTCAAAATCTACTGGTTTTGGCTTTGTCTCATTTTCTTCAGCTGAGGATGTAGACGCTGCAATCTCATCTTTCAACAATTCTTTGTTAGAAGGACAACGAATTCGCGTGAACAAGGCATAA 771 0.4345 MALSSSLFSPPHLLSNHTTKSISTASRFSIHLLKSSHSQPFVKSTPSLAVPTPRHFQRPFAVAEDTAVTSSPDPKSEAARKLYIGNIPRDIDNSELTRIVEEHGAVERAEVMYDKYSGRSRRFAFVTMKTVEDANSVIEKLNGTEIGGREVKVNITEKPLPTVDLSILQAEDSEFVDSPHKVYVGNLAKTVTTDVLKDFFSSNGNVLSAKVSRVPGTSKSTGFGFVSFSSAEDVDAAISSFNNSLLEGQRIRVNKA 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g2646 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 180 256 IPR000504 GO:0003723
Prci6g2646 256 SUPERFAMILY RNA-binding domain, RBD 174 256 IPR035979 GO:0003676
Prci6g2646 256 CDD RRM1_PSRP2_like 81 160 - -
Prci6g2646 256 PANTHER OS02G0815200 PROTEIN 15 255 - -
Prci6g2646 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 152 IPR000504 GO:0003723
Prci6g2646 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 182 252 IPR000504 GO:0003723
Prci6g2646 256 SMART rrm1_1 181 254 IPR000504 GO:0003723
Prci6g2646 256 SMART rrm1_1 81 154 IPR000504 GO:0003723
Prci6g2646 256 FunFam 30S ribosomal protein 2, chloroplastic 167 256 - -
Prci6g2646 256 Gene3D - 168 256 IPR012677 -
Prci6g2646 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 158 IPR000504 GO:0003723
Prci6g2646 256 Gene3D - 52 162 IPR012677 -
Prci6g2646 256 SUPERFAMILY RNA-binding domain, RBD 72 159 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g2646 Prci-Chr6 38304178 38308319 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g2646 56 256 Eukaryotic Initiation Factors Gene Family AT1G22760 28.502 3.11e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g2646 K13126 - qsa:O6P43_029496 356.295