Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g2587 ATGATGACAATGGGGAAGGACAACAAAATGAAGGGCAACAATGTCAACAAGAGCAAGCTGAGGAAAGGACTGTGGTCGCCAGAGGAAGACGAGAAGCTGATGAGGTACATGTTGACGAACGGACAAGGTTGTTGGAGTGACATTGCCAGAAACTCTGGACTCCTTAGGTGTGGCAAAAGCTGTCGTCTTCGTTGGATCAATTACCTCAGACCTGACCTCAAACGTGGCCCTTTTTCTCCTCACGAAGAACACCTCATCATTCATCTTCACTCTCTTCTAGGCAACAGATGGTCACATATTGCTGCACGTCTTCCTGGAAGAACAGACAATGAAATTAAGAATTTCTGGAACTCCGCATTGAAGAAAAGGCTAAAAAACAACAGCACCACTTCCTTAACTTCATCACCAAACAACTCATCCCCGTCGACGTCATCATCAGACCCTAAAAATCATGTCTTGACAAGCATGATCGACCCATTAATGCCACCGTGA 492 0.4553 MMTMGKDNKMKGNNVNKSKLRKGLWSPEEDEKLMRYMLTNGQGCWSDIARNSGLLRCGKSCRLRWINYLRPDLKRGPFSPHEEHLIIHLHSLLGNRWSHIAARLPGRTDNEIKNFWNSALKKRLKNNSTTSLTSSPNNSSPSTSSSDPKNHVLTSMIDPLMPP 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g2587 163 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Prci6g2587 163 Gene3D - 76 151 - -
Prci6g2587 163 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Prci6g2587 163 Pfam Myb-like DNA-binding domain 75 119 IPR001005 -
Prci6g2587 163 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Prci6g2587 163 PANTHER MYB DOMAIN PROTEIN 55 14 148 - -
Prci6g2587 163 MobiDBLite consensus disorder prediction 127 152 - -
Prci6g2587 163 SMART sant 74 122 IPR001005 -
Prci6g2587 163 SMART sant 21 71 IPR001005 -
Prci6g2587 163 Gene3D - 19 75 - -
Prci6g2587 163 CDD SANT 25 69 IPR001005 -
Prci6g2587 163 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Prci6g2587 163 FunFam MYB transcription factor 19 75 - -
Prci6g2587 163 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
Prci6g2587 163 SUPERFAMILY Homeodomain-like 20 116 IPR009057 -
Prci6g2587 163 CDD SANT 77 117 IPR001005 -
Prci6g2587 163 MobiDBLite consensus disorder prediction 127 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g2587 Prci-Chr6 37698215 37699739 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g2587 5 125 MYB Transcription Factor Family AT3G08500 85.124 9.99e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci6g2587 Myb_DNA-binding 2.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g2587 K09422 - pcin:129314373 302.367