Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g2580 ATGCCAGGAAAACCTGATGTGGAAGATAAGAGGTTTGAAGGAGGTGGAGGGCAGATTCAATTCCAATCAGGCATTTACTCTCAGCCATGGTGGCGTGGTGTGGAGGAAAATGCCTCTAAATCATCTGCAGTATATCAGATAAGTGGTTCAGTCATGAATTCACCGGCTAAGGACGGAGCAGATAAAGTTGATTTTCCAAAGCAGACACAGCCTATGGTTTCACCTTCACTTTCTGCTGTTGGTGGAAATGACAACAAAGGGCACCAAAATAACAAATATGTTCTGTCCTCTCCAGCACATACGATGGGTAAACACAGTTCAAATTCCCAAGCCGAACTTGTTGGTCATTCAATTGTTTTTACCTCTTACCCTTACTCAGATGCACAATATGCTGGAATCTTGACATCCCATGGGCATCAAAATATGATAAATCCTCAGTTGTATGGAATGCATCATGCTAGAATGCCTTTGCCACTTGAAATGGAAGAGGAGCCTGTCTATGTCAATGCAAAGCAATATCATGGTATTTTAAGGCGAAGGCAATCACGTGCTAAGGCTGAGCTTGCAAGAAAAGTTGTTAAAGCTAGAAAGCCATATCTTCACGAATCTCGTCACCTACATGCTATGAGAAGGGCAAGAGGATGTGGGGTTCGCTTTTTGAATACAAAGAAGGTTGAAAATAACAATTCCAACGTTGCTCCAAAAAAGGACAAGAACAGTGGTGCAAACCTGTCAGCAATATCTGCCAATACACCCTCCTCTGATCATTCTCTTATCAACAACGAGATTTTCAGCTCATCAAAGAATCATGACATGTCAGTGTCCATGGCTGGGAACATGCTCAATGGAGACTTGTTTGGTCGACAGAGGGGAAGCATGCAGATTCATGGAACCCCAAATATGGCTATCAAATGA 915 0.4273 MPGKPDVEDKRFEGGGGQIQFQSGIYSQPWWRGVEENASKSSAVYQISGSVMNSPAKDGADKVDFPKQTQPMVSPSLSAVGGNDNKGHQNNKYVLSSPAHTMGKHSSNSQAELVGHSIVFTSYPYSDAQYAGILTSHGHQNMINPQLYGMHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELARKVVKARKPYLHESRHLHAMRRARGCGVRFLNTKKVENNNSNVAPKKDKNSGANLSAISANTPSSDHSLINNEIFSSSKNHDMSVSMAGNMLNGDLFGRQRGSMQIHGTPNMAIK 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g2580 304 SMART cbf3 161 222 IPR001289 GO:0003700|GO:0006355
Prci6g2580 304 PRINTS CCAAT-binding transcription factor subunit B signature 165 187 IPR001289 GO:0003700|GO:0006355
Prci6g2580 304 PRINTS CCAAT-binding transcription factor subunit B signature 196 219 IPR001289 GO:0003700|GO:0006355
Prci6g2580 304 Gene3D - 162 223 - -
Prci6g2580 304 MobiDBLite consensus disorder prediction 227 258 - -
Prci6g2580 304 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 164 219 IPR001289 GO:0003700|GO:0006355
Prci6g2580 304 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 66 272 IPR001289 GO:0003700|GO:0006355
Prci6g2580 304 ProSitePatterns NF-YA/HAP2 subunit signature. 167 187 IPR018362 GO:0003677|GO:0016602
Prci6g2580 304 ProSiteProfiles NF-YA/HAP2 family profile. 162 222 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g2580 Prci-Chr6 37467676 37472227 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g2580 22 258 CCAAT-HAP2 Transcription Factor Family AT5G12840 40.079 7.07e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Prci6g2580 CBFB_NFYA 5.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g2580 K08064 - gmx:100782085 280.411