Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g2578 ATGCCAGGAAAACCTGATGTGGAAGATAAGAGGTTTGAAGGAGGTGGAGGGCAGATTCAATTCCAATCAGGCATTTACTCTCAGCCATGGTGGCGTGGTGTGGAGGAAAATGCCTCTAAATCATCTGCAGTATATCAGATAAGTGGTTCAGTCATGAATTCACCGGCTAAGGACGGAGCAGATAAAGTTGATTTTCCAAAGCAGACACAGCCTATGGTTTCACCTTCACTTTCTGCTGTTGGTGGAAATGACAACAAAGGGCACCAAAATAACAAATATGTTCTGTCCTCTCCAGCACATACGATGGGTAAACACAGTTCAAATTCCCAAGCCGAACTTGTTGGTCATTCAATTGTTTTTACCTCTTACCCTTACTCAGATGCACAATATGCTGGAATCTTGACATCCCATGGGCATCAAAATATGGTCTGTTTGCTAAATGCAGTTTCAATAAATCCTCAGTTGTATGGAATGCATCATGCTAGAATGCCTTTGCCACTTGAAATGGAAGAGGAGCCTGTCTATGTCAATGCAAAGCAATATCATGGTATTTTAAGGCGAAGGCAATCACGTGCTAAGGCTGAGCTTGCAAGAAAAGTTGTTAAAGCTAGAAAGCCATATCTTCACGAATCTCGTCACCTACATGCTATGAGAAGGGCAAGAGGATGTGGGGTTCGCTTTTTGAATACAAAGAAGGTTGAAAATAACAATTCCAACGTTGCTCCAAAAAAGGACAAGAACAGTGGTGCAAACCTGTCAGCAATATCTGCCAATACACCCTCCTCTGATCATTCTCTTATCAACAACGAGATTTTCAGCTCATCAAAGAATCATGACATGTCAGTGTCCATGGCTGGGAACATGCTCAATGGAGACTTGTTTGGTCGACAGAGGGGAAGCATGCAGATTCATGGAACCCCAAATATGGCTATCAAATGA 939 0.426 MPGKPDVEDKRFEGGGGQIQFQSGIYSQPWWRGVEENASKSSAVYQISGSVMNSPAKDGADKVDFPKQTQPMVSPSLSAVGGNDNKGHQNNKYVLSSPAHTMGKHSSNSQAELVGHSIVFTSYPYSDAQYAGILTSHGHQNMVCLLNAVSINPQLYGMHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELARKVVKARKPYLHESRHLHAMRRARGCGVRFLNTKKVENNNSNVAPKKDKNSGANLSAISANTPSSDHSLINNEIFSSSKNHDMSVSMAGNMLNGDLFGRQRGSMQIHGTPNMAIK 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g2578 312 Gene3D - 170 231 - -
Prci6g2578 312 PRINTS CCAAT-binding transcription factor subunit B signature 173 195 IPR001289 GO:0003700|GO:0006355
Prci6g2578 312 PRINTS CCAAT-binding transcription factor subunit B signature 204 227 IPR001289 GO:0003700|GO:0006355
Prci6g2578 312 ProSitePatterns NF-YA/HAP2 subunit signature. 175 195 IPR018362 GO:0003677|GO:0016602
Prci6g2578 312 MobiDBLite consensus disorder prediction 235 266 - -
Prci6g2578 312 SMART cbf3 169 230 IPR001289 GO:0003700|GO:0006355
Prci6g2578 312 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 66 280 IPR001289 GO:0003700|GO:0006355
Prci6g2578 312 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 172 227 IPR001289 GO:0003700|GO:0006355
Prci6g2578 312 ProSiteProfiles NF-YA/HAP2 family profile. 170 230 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g2578 Prci-Chr6 37467676 37472232 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g2578 22 266 CCAAT-HAP2 Transcription Factor Family AT5G12840 39.615 9.74e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Prci6g2578 CBFB_NFYA 5.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g2578 K08064 - gmx:100782085 273.478