Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g2575 ATGGGTCTCATTTCAAAGGAAAACTTGCGAAGGATGCCAGGAAAACCTGATGTGGAAGATAAGAGGTTTGAAGGAGGTGGAGGGCAGATTCAATTCCAATCAGGCATTTACTCTCAGCCATGGTGGCGTGGTGTGGAGGAAAATGCCTCTAAATCATCTGCAGGATATCAGATAAGTGGTTCAGTCATGAATTCACCGGCTAAGGAAGGAGCAGATAAAGTTGATTTTCCAAAGCAGACACGGCCTATGGTTTCACCTTCACTTTCTGCTGTTGGTGGAAATGACAACAAAGGGCACCAAAATAACAAATATGTTCTGTCCTCTCCAGCACATACGATGGGCAAACACAGTTCAAATTCCCAAGCCGAACTTGTTGGTCATTCAATTGTTTTTACCTCTTACCCTTACTCAGATGCACAATATGCTGGAATCTTGACATCCCATGGGCATCAAAATATGATAAATCCTCAGTTGTATGGAATGCATCATGCTAGAATGCCTTTGCCACTTGAAATGGAAGAGGAGCCTGTCTATGTCAATGCAAAGCAGTATCATGGTATTTTAAGGCGAAGGCAATCACGTGCTAAGGCTGAGCTTGCAAGAAAAGTTGTTAAAGCTAGAAAGCCATATCTTCACGAATCTCGTCACCTACATGCTATGAGAAGGGCAAGAGGATGTGGGGGTCGCTTTTTGAATACAAAGAAGGTTGAAAATAACAATTCCAACGTTGCTCCAAAAAAGGACAAGAACAGCGGTGCAAACCTGTCAGCAATATCTGCCAATACACCCTCCTCTGATCATTCTCTTATCAACAACGAGATTTTCAGCTCATCAAAGAATCATGACATGTCAGTGTCCATGGTTGGGAACATGCTCAATGGAGACTTGTTTGGTCGACAGAGGGGAAGCATGCAGATTCATGGAACCCCAAATATGGCTATCAAATGA 948 0.4314 MGLISKENLRRMPGKPDVEDKRFEGGGGQIQFQSGIYSQPWWRGVEENASKSSAGYQISGSVMNSPAKEGADKVDFPKQTRPMVSPSLSAVGGNDNKGHQNNKYVLSSPAHTMGKHSSNSQAELVGHSIVFTSYPYSDAQYAGILTSHGHQNMINPQLYGMHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELARKVVKARKPYLHESRHLHAMRRARGCGGRFLNTKKVENNNSNVAPKKDKNSGANLSAISANTPSSDHSLINNEIFSSSKNHDMSVSMVGNMLNGDLFGRQRGSMQIHGTPNMAIK 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g2575 315 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 175 230 IPR001289 GO:0003700|GO:0006355
Prci6g2575 315 Gene3D - 173 234 - -
Prci6g2575 315 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 71 284 IPR001289 GO:0003700|GO:0006355
Prci6g2575 315 MobiDBLite consensus disorder prediction 1 29 - -
Prci6g2575 315 SMART cbf3 172 233 IPR001289 GO:0003700|GO:0006355
Prci6g2575 315 MobiDBLite consensus disorder prediction 10 24 - -
Prci6g2575 315 ProSiteProfiles NF-YA/HAP2 family profile. 173 233 IPR001289 GO:0003700|GO:0006355
Prci6g2575 315 MobiDBLite consensus disorder prediction 239 269 - -
Prci6g2575 315 PRINTS CCAAT-binding transcription factor subunit B signature 207 230 IPR001289 GO:0003700|GO:0006355
Prci6g2575 315 PRINTS CCAAT-binding transcription factor subunit B signature 176 198 IPR001289 GO:0003700|GO:0006355
Prci6g2575 315 ProSitePatterns NF-YA/HAP2 subunit signature. 178 198 IPR018362 GO:0003677|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g2575 Prci-Chr6 37452929 37457500 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g2575 33 269 CCAAT-HAP2 Transcription Factor Family AT5G12840 37.698 1.34e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Prci6g2575 CBFB_NFYA 3.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g2575 K08064 - gmx:100782085 284.648