Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g2574 ATGCCAGGAAAACCTGATGTGGAAGATAAGAGGTTTGAAGGAGGTGGAGGGCAGATTCAATTCCAATCAGGCATTTACTCTCAGCCATGGTGGCGTGGTGTGGAGGAAAATGCCTCTAAATCATCTGCAGGATATCAGATAAGTGGTTCAGTCATGAATTCACCGGCTAAGGAAGGAGCAGATAAAGTTGATTTTCCAAAGCAGACACGGCCTATGGTTTCACCTTCACTTTCTGCTGTTGGTGGAAATGACAACAAAGGGCACCAAAATAACAAATATGTTCTGTCCTCTCCAGCACATACGATGGGCAAACACAGTTCAAATTCCCAAGCCGAACTTGTTGGTCATTCAATTGTTTTTACCTCTTACCCTTACTCAGATGCACAATATGCTGGAATCTTGACATCCCATGGGCATCAAAATATGGTCTGTTTGCTAAATGCAGTTTCAATAAATCCTCAGTTGTATGGAATGCATCATGCTAGAATGCCTTTGCCACTTGAAATGGAAGAGGAGCCTGTCTATGTCAATGCAAAGCAGTATCATGGTATTTTAAGGCGAAGGCAATCACGTGCTAAGGCTGAGCTTGCAAGAAAAGTTGTTAAAGCTAGAAAGCCATATCTTCACGAATCTCGTCACCTACATGCTATGAGAAGGGCAAGAGGATGTGGGGGTCGCTTTTTGAATACAAAGAAGGTTGAAAATAACAATTCCAACGTTGCTCCAAAAAAGGACAAGAACAGCGGTGCAAACCTGTCAGCAATATCTGCCAATACACCCTCCTCTGATCATTCTCTTATCAACAACGAGATTTTCAGCTCATCAAAGAATCATGACATGTCAGTGTCCATGGTTGGGAACATGCTCAATGGAGACTTGTTTGGTCGACAGAGGGGAAGCATGCAGATTCATGGAACCCCAAATATGGCTATCAAATGA 939 0.4302 MPGKPDVEDKRFEGGGGQIQFQSGIYSQPWWRGVEENASKSSAGYQISGSVMNSPAKEGADKVDFPKQTRPMVSPSLSAVGGNDNKGHQNNKYVLSSPAHTMGKHSSNSQAELVGHSIVFTSYPYSDAQYAGILTSHGHQNMVCLLNAVSINPQLYGMHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELARKVVKARKPYLHESRHLHAMRRARGCGGRFLNTKKVENNNSNVAPKKDKNSGANLSAISANTPSSDHSLINNEIFSSSKNHDMSVSMVGNMLNGDLFGRQRGSMQIHGTPNMAIK 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g2574 312 MobiDBLite consensus disorder prediction 1 21 - -
Prci6g2574 312 SMART cbf3 169 230 IPR001289 GO:0003700|GO:0006355
Prci6g2574 312 Gene3D - 170 231 - -
Prci6g2574 312 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 63 281 IPR001289 GO:0003700|GO:0006355
Prci6g2574 312 MobiDBLite consensus disorder prediction 236 266 - -
Prci6g2574 312 ProSitePatterns NF-YA/HAP2 subunit signature. 175 195 IPR018362 GO:0003677|GO:0016602
Prci6g2574 312 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 172 227 IPR001289 GO:0003700|GO:0006355
Prci6g2574 312 ProSiteProfiles NF-YA/HAP2 family profile. 170 230 IPR001289 GO:0003700|GO:0006355
Prci6g2574 312 PRINTS CCAAT-binding transcription factor subunit B signature 204 227 IPR001289 GO:0003700|GO:0006355
Prci6g2574 312 PRINTS CCAAT-binding transcription factor subunit B signature 173 195 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g2574 Prci-Chr6 37452929 37457501 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g2574 22 266 CCAAT-HAP2 Transcription Factor Family AT5G12840 37.308 1.77e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Prci6g2574 CBFB_NFYA 3.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g2574 K08064 - gmx:100782085 277.715