Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g2573 ATGGGTCTCATTTCAAAGGAAAACTTGCGAAGGATGCCAGGAAAACCTGATGTGGAAGATAAGAGGTTTGAAGGAGGTGGAGGGCAGATTCAATTCCAATCAGGCATTTACTCTCAGCCATGGTGGCGTGGTGTGGAGGAAAATGCCTCTAAATCATCTGCAGGATATCAGATAAGTGGTTCAGTCATGAATTCACCGGCTAAGGAAGGAGCAGATAAAGTTGATTTTCCAAAGCAGACACGGCCTATGGTTTCACCTTCACTTTCTGCTGTTGGTGGAAATGACAACAAAGGGCACCAAAATAACAAATATGTTCTGTCCTCTCCAGCACATACGATGGGCAAACACAGTTCAAATTCCCAAGCCGAACTTGTTGGTCATTCAATTGTTTTTACCTCTTACCCTTACTCAGATGCACAATATGCTGGAATCTTGACATCCCATGGGCATCAAAATATGGTCTGTTTGCTAAATGCAGTTTCAATAAATCCTCAGTTGTATGGAATGCATCATGCTAGAATGCCTTTGCCACTTGAAATGGAAGAGGAGCCTGTCTATGTCAATGCAAAGCAGTATCATGGTATTTTAAGGCGAAGGCAATCACGTGCTAAGGCTGAGCTTGCAAGAAAAGTTGTTAAAGCTAGAAAGCCATATCTTCACGAATCTCGTCACCTACATGCTATGAGAAGGGCAAGAGGATGTGGGGGTCGCTTTTTGAATACAAAGAAGGTTGAAAATAACAATTCCAACGTTGCTCCAAAAAAGGACAAGAACAGCGGTGCAAACCTGTCAGCAATATCTGCCAATACACCCTCCTCTGATCATTCTCTTATCAACAACGAGATTTTCAGCTCATCAAAGAATCATGACATGTCAGTGTCCATGGTTGGGAACATGCTCAATGGAGACTTGTTTGGTCGACAGAGGGGAAGCATGCAGATTCATGGAACCCCAAATATGGCTATCAAATGA 972 0.43 MGLISKENLRRMPGKPDVEDKRFEGGGGQIQFQSGIYSQPWWRGVEENASKSSAGYQISGSVMNSPAKEGADKVDFPKQTRPMVSPSLSAVGGNDNKGHQNNKYVLSSPAHTMGKHSSNSQAELVGHSIVFTSYPYSDAQYAGILTSHGHQNMVCLLNAVSINPQLYGMHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELARKVVKARKPYLHESRHLHAMRRARGCGGRFLNTKKVENNNSNVAPKKDKNSGANLSAISANTPSSDHSLINNEIFSSSKNHDMSVSMVGNMLNGDLFGRQRGSMQIHGTPNMAIK 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g2573 323 ProSitePatterns NF-YA/HAP2 subunit signature. 186 206 IPR018362 GO:0003677|GO:0016602
Prci6g2573 323 SMART cbf3 180 241 IPR001289 GO:0003700|GO:0006355
Prci6g2573 323 PRINTS CCAAT-binding transcription factor subunit B signature 215 238 IPR001289 GO:0003700|GO:0006355
Prci6g2573 323 PRINTS CCAAT-binding transcription factor subunit B signature 184 206 IPR001289 GO:0003700|GO:0006355
Prci6g2573 323 MobiDBLite consensus disorder prediction 1 29 - -
Prci6g2573 323 MobiDBLite consensus disorder prediction 10 24 - -
Prci6g2573 323 ProSiteProfiles NF-YA/HAP2 family profile. 181 241 IPR001289 GO:0003700|GO:0006355
Prci6g2573 323 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 71 292 IPR001289 GO:0003700|GO:0006355
Prci6g2573 323 MobiDBLite consensus disorder prediction 247 277 - -
Prci6g2573 323 Gene3D - 181 242 - -
Prci6g2573 323 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 183 238 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g2573 Prci-Chr6 37452929 37457502 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g2573 33 277 CCAAT-HAP2 Transcription Factor Family AT5G12840 37.308 2.60e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Prci6g2573 CBFB_NFYA 3.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g2573 K08064 - gmx:100782085 277.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci6g2573 6 37452929 37457502 Prci6g2573 6 37452929 37457502 ECH