Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g2516 ATGCAAAGTCTTGCAAAGATAGAAAAATACACAAACAAATTAAAACAAAAAAAGGAGAGAGAAACCATGGCTTTTTTGAATTCTAAAGAGACTCGTCCTAATGAAGAGCAAGAGGATTCATATGCTCTTTTGGCCATGCTTCAGTGTTGTAGCCAAATCTACTGTGCAGTTCTCAAAGCTTCACTTGAGCTTGACTTGTTTGACATCATAGCTAAGGAAGGAGGAAGACACGTTTCAGCTTCAGAAGTTGCCTCAAAGCTTCCAAGTTCATCTCAGCACAAAGACTTGGCTTTCAGGATCGATCGTCTCTTGAGGCTTCTTGCAAGTCACTCTCTTCTGAATTGTTCAGTTTGTGAGAAGGAAGATGGTGACACTGAGAGACTCTATTCGATTTCTCCTGTGGGAAAGTACTTTGTTAGTCATGGGGACGATGATAGTGGATACTTGACTCTCTCATTCATTTGTCACAAGGCACTTATGGATGCTTGGATGAATTTTAAAGTGGCAATTGTAGAGGAAGACAATGACTTATTCAAGAAAGTCCATGGAATGCCAATGTACCGATACGCTGAGATAGATCCAACATGGAACAACATTTTCAACAAAGCAATGGCCAACCGTTGCAACATAGAGATGAGAAGAATATTAGAGATATACAAAGGATTTGAGGGAATATCAACACTTGTTGATGTTGGTGGTGGAACTGGCCAAAACCTCAAAATGATTGTCTCAAAGTATCCTTCAATCAAGGCCATCAATTTTGATTTGCCCAATGTTATTCAAAATGCACCACTTCATCCAAGGATCAAGCATGTTGAAGGGGATATGTTTGAAAACGTTCCGAAAGGTGATGCCATTATGTTGAAGGCTGTATGCCACAATTGGTCAGATGAAAACAGCATAAAAGTGCTGAGGAAATGCTATGAGTCGTTGCCAGAAAAAGGGAAGGTGATAGTGATGGAGTTCATAATGCCCGAAGAAATTGGACCAACAAAGGAAGCCAAGTTCGTGGCAAGCTTGGACAACATCATGTTTCTTCATGATGGAGAAGAAAGAACTGAGAAAGAATTTGAATCTCTTTGCAAACATTCTGGTTTTTCTGGTTTCAAAATCGCTTGTCGTGCTTTCTCTGCTTTAGGAGTTATGGAGTTCTACAAGTAA 1161 0.3988 MQSLAKIEKYTNKLKQKKERETMAFLNSKETRPNEEQEDSYALLAMLQCCSQIYCAVLKASLELDLFDIIAKEGGRHVSASEVASKLPSSSQHKDLAFRIDRLLRLLASHSLLNCSVCEKEDGDTERLYSISPVGKYFVSHGDDDSGYLTLSFICHKALMDAWMNFKVAIVEEDNDLFKKVHGMPMYRYAEIDPTWNNIFNKAMANRCNIEMRRILEIYKGFEGISTLVDVGGGTGQNLKMIVSKYPSIKAINFDLPNVIQNAPLHPRIKHVEGDMFENVPKGDAIMLKAVCHNWSDENSIKVLRKCYESLPEKGKVIVMEFIMPEEIGPTKEAKFVASLDNIMFLHDGEERTEKEFESLCKHSGFSGFKIACRAFSALGVMEFYK 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g2516 386 SUPERFAMILY "Winged helix" DNA-binding domain 38 142 IPR036390 -
Prci6g2516 386 FunFam Caffeic acid 3-O-methyltransferase 24 138 - -
Prci6g2516 386 Pfam O-methyltransferase domain 163 367 IPR001077 GO:0008171
Prci6g2516 386 Gene3D Vaccinia Virus protein VP39 197 375 IPR029063 -
Prci6g2516 386 Pfam Dimerisation domain 57 108 IPR012967 GO:0046983
Prci6g2516 386 CDD AdoMet_MTases 227 324 - -
Prci6g2516 386 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 46 386 IPR016461 GO:0008168
Prci6g2516 386 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 153 382 IPR029063 -
Prci6g2516 386 PANTHER O-METHYLTRANSFERASE 52 376 IPR016461 GO:0008168
Prci6g2516 386 PIRSF O-mtase 23 386 IPR016461 GO:0008168
Prci6g2516 386 Gene3D - 54 215 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g2516 Prci-Chr6 36593724 36597967 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g2516 30 386 Monolignol Biosynthesis Gene Families AT5G54160 46.556 9.01e-110 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g2516 - - pcin:129312384 508.834