Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g2479 ATGAGCATGGCTTCTAGTAATCCATTCTTTGATGATATACGGAGCAAATCTGATGTTGATCCTCCTTCAAATGAAGAGCCAATGGATATCAGCGAGCTAGTGAATGATCCTGCACCAACTGCACTAAAATCTAATGTAGCTGTTACAAGCAGTGTTCGTGAACTTCTAGAGTGTCCTGTGTGCTTGAATGCAATGTACCCTCCAATCCACCAGTGTTCAAATGGCCATACTTTGTGCTCGGGTTGCAAACCCAGGGTCCACAACCGGTGTCCTACCTGTAGACATGAGCTTGGCAATATTAGATGCTTGGCATTGGAGAAGGTGGCTGCATCTTTGGAACTTCCTTGTAAATACCAGCCTTTTGGGTGCATGGGGATATATCCATACTACTGCAAGTTGAAACATGAATCTCAATGCGCATGTAGACCCTATAACTGTCCTTATGCTGGTTCAGAATGCAGCGTCATTGGTGATATTCCTTTTTTGGTTGCCCATTTGAAAGATGATCACAAAGTGGACATGCATAATGGTAGCACTTTTAATCATCGTTATGTCAAATCAAACCCACAAGAAGTTGAAAACGCCACATGGATGCTTACGGTCTTCAGCTGCTTTGGTCAATATTTTTGTCTACACTTCGAAGCTTTTCAGCTGGGAATGGCTCCAGTCTACATAGCCTTCTTGCGATTCATGGGCGATGATAGCGAGGCAAAGAACTATAGCTACAGTCTTGAGGTGGGCGGAAACGGGAGGAAGATGACTTGGCAGGGAGTGCCTAGAAGCATCAGGGACAGCCACCGCAAGGTTCGGGACAGTTTTGACGGTCTCATCATTCAAAGGAACATGGCTCTCTTCTTTTCAGGTGGTGACAGGAAGGAATTGAAGCTAAGGGTTACAGGGAGGATTTGGAAAGAACAGTGA 921 0.4506 MSMASSNPFFDDIRSKSDVDPPSNEEPMDISELVNDPAPTALKSNVAVTSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQPFGCMGIYPYYCKLKHESQCACRPYNCPYAGSECSVIGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDSEAKNYSYSLEVGGNGRKMTWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g2479 306 ProSiteProfiles Zinc finger RING-type profile. 58 94 IPR001841 -
Prci6g2479 306 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 167 299 IPR008974 GO:0005515
Prci6g2479 306 CDD RING-HC_SIAHs 56 94 - -
Prci6g2479 306 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 39 305 - -
Prci6g2479 306 MobiDBLite consensus disorder prediction 1 29 - -
Prci6g2479 306 ProSiteProfiles Zinc finger SIAH-type profile. 111 171 IPR013010 GO:0008270
Prci6g2479 306 SUPERFAMILY TRAF domain-like 111 303 - -
Prci6g2479 306 CDD Sina 172 300 - -
Prci6g2479 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 166 IPR013083 -
Prci6g2479 306 FunFam E3 ubiquitin-protein ligase SINAT5-like 167 299 - -
Prci6g2479 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 110 IPR013083 -
Prci6g2479 306 SUPERFAMILY RING/U-box 52 99 - -
Prci6g2479 306 Pfam Seven in absentia protein family 100 299 IPR018121 GO:0005737|GO:0006511|GO:0007275
Prci6g2479 306 FunFam E3 ubiquitin-protein ligase SINAT5-like 16 109 - -
Prci6g2479 306 FunFam E3 ubiquitin-protein ligase SINAT3 110 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g2479 Prci-Chr6 36000552 36005193 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g2479 49 306 C3H Transcription Factor Family AT2G41980 79.070 1.24e-158 443
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g2479 K04506 - gmx:100793457 601.668