Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g2288 ATGATTCAGAGGCCATATGTGTGTTCTATGGATGACTGTCAAGCGAGTTACAGAAGAAAGGACCACTTGACTCGTCACCTTCTGCAACATAAAGGGAAAACTTTTAAATGTCCACTTGAGGATTGTAACCGTGACTTTGCTTTCCAAGGGAATATGACCAGACATGTCAAAGAATTTCATAATGAGAATTCCACCCCGGCCAAAGTTGAAGCTCAGAAGCAGTATAAATGCCCAGAAATTGGCTGTGGAAAGGTTTTCAAATTTGCTTCAAAGCTACAAAAGCATGAAAATTGTCATGTTAAGCTGGACTCAGTAGAGGTAGTCTGCTTGGATCCTGGTTGTATAAAACATTTTACCAATGTCCAGTGCCTTAAAGTCCATATCAAAACCTGTCATCAACATGTAACCTGTGAAACTTGTGGGAAAAAGGAACTGAAGAAGAATATCAAGCGGCACCTCCGGTTGCATGAAAAATGTTCTTCATCAGAGGCGTTCAAATGTGAACACAAGGGTTGTAGCAGCACATTCACTAGTAAATCCAATCTTCACCAGCATGTAAAGGCTGTCCACTTCAAAGAAAAACCATTTGTGTGTGGCTTTCCTGATTGTGGCAAGAGATTTTCCTACAAACACGTGAGAGACAACCACGAAAAAACTGGGTTACATGTTTATACCCATGGGGATTTTGAAGAATCTGACGAACAATTCAGGTCAAGGCCAAGGGGAGGGCGAAAGAGAAAGTGTCCTACAGTTGAAATGTTAGTTAGGAAGAGGGTTACTCCTCCTGATCAATTGGAGCACTGCTTGTTTGGAGAGGATACAGAGTAA 828 0.4155 MIQRPYVCSMDDCQASYRRKDHLTRHLLQHKGKTFKCPLEDCNRDFAFQGNMTRHVKEFHNENSTPAKVEAQKQYKCPEIGCGKVFKFASKLQKHENCHVKLDSVEVVCLDPGCIKHFTNVQCLKVHIKTCHQHVTCETCGKKELKKNIKRHLRLHEKCSSSEAFKCEHKGCSSTFTSKSNLHQHVKAVHFKEKPFVCGFPDCGKRFSYKHVRDNHEKTGLHVYTHGDFEESDEQFRSRPRGGRKRKCPTVEMLVRKRVTPPDQLEHCLFGEDTE 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g2288 275 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Prci6g2288 275 ProSitePatterns Zinc finger C2H2 type domain signature. 109 132 IPR013087 -
Prci6g2288 275 ProSiteProfiles Zinc finger C2H2 type domain profile. 196 222 IPR013087 -
Prci6g2288 275 ProSiteProfiles Zinc finger C2H2 type domain profile. 35 65 IPR013087 -
Prci6g2288 275 Gene3D Classic Zinc Finger 62 135 - -
Prci6g2288 275 Gene3D Classic Zinc Finger 2 32 - -
Prci6g2288 275 ProSiteProfiles Zinc finger C2H2 type domain profile. 165 195 IPR013087 -
Prci6g2288 275 ProSitePatterns Zinc finger C2H2 type domain signature. 198 222 IPR013087 -
Prci6g2288 275 Gene3D Classic Zinc Finger 193 219 - -
Prci6g2288 275 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 35 IPR013087 -
Prci6g2288 275 Gene3D Classic Zinc Finger 138 192 - -
Prci6g2288 275 ProSitePatterns Zinc finger C2H2 type domain signature. 167 190 IPR013087 -
Prci6g2288 275 SUPERFAMILY beta-beta-alpha zinc fingers 148 207 IPR036236 -
Prci6g2288 275 SMART c2h2final6 165 190 IPR013087 -
Prci6g2288 275 SMART c2h2final6 6 30 IPR013087 -
Prci6g2288 275 SMART c2h2final6 75 99 IPR013087 -
Prci6g2288 275 SMART c2h2final6 107 132 IPR013087 -
Prci6g2288 275 SMART c2h2final6 35 60 IPR013087 -
Prci6g2288 275 SMART c2h2final6 135 156 IPR013087 -
Prci6g2288 275 SMART c2h2final6 196 222 IPR013087 -
Prci6g2288 275 SUPERFAMILY beta-beta-alpha zinc fingers 33 61 IPR036236 -
Prci6g2288 275 PANTHER ZINC FINGER PROTEIN 3 263 - -
Prci6g2288 275 ProSitePatterns Zinc finger C2H2 type domain signature. 77 99 IPR013087 -
Prci6g2288 275 ProSitePatterns Zinc finger C2H2 type domain signature. 37 60 IPR013087 -
Prci6g2288 275 SUPERFAMILY beta-beta-alpha zinc fingers 4 32 IPR036236 -
Prci6g2288 275 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 104 IPR013087 -
Prci6g2288 275 Gene3D Classic Zinc Finger 33 61 - -
Prci6g2288 275 Pfam Zinc finger, C2H2 type 75 96 IPR013087 -
Prci6g2288 275 Pfam Zinc finger, C2H2 type 6 30 IPR013087 -
Prci6g2288 275 Pfam Zinc finger, C2H2 type 35 60 IPR013087 -
Prci6g2288 275 SUPERFAMILY beta-beta-alpha zinc fingers 72 99 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g2288 Prci-Chr6 33359360 33362027 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g2288 1 225 C2H2 Transcription Factor Family AT1G72050 51.264 3.38e-93 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci6g2288 zf-C2H2 0.0016 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g2288 K09191 - qsa:O6P43_001489 444.891