Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g2287 ATGGATGACTGTCAAGCGAGTTACAGAAGAAAGGACCACTTGACTCGTCACCTTCTGCAACATAAAGGGAAAACTTTTAAATGTCCACTTGAGGATTGTAACCGTGACTTTGCTTTCCAAGGGAATATGACCAGACATGTCAAAGAATTTCATAATGAGAATTCCACCCCGGCCAAAGTTGAAGCTCAGAAGCAGTATAAATGCCCAGAAATTGGCTGTGGAAAGGTTTTCAAATTTGCTTCAAAGCTACAAAAGCATGAAAATTGTCATGTTAAGCTGGACTCAGTAGAGGTAGTCTGCTTGGATCCTGGTTGTATAAAACATTTTACCAATGTCCAGTGCCTTAAAGTCCATATCAAAACCTGTCATCAACATGTAACCTGTGAAACTTGTGGGAAAAAGGAACTGAAGAAGAATATCAAGCGGCACCTCCGGTTGCATGAAAAATGTTCTTCATCAGAGGCGTTCAAATGTGAACACAAGGGTTGTAGCAGCACATTCACTAGTAAATCCAATCTTCACCAGCATGTAAAGGCTGTCCACTTCAAAGAAAAACCATTTGTGTGTGGCTTTCCTGATTGTGGCAAGAGATTTTCCTACAAACACGTGAGAGACAACCACGAAAAAACTGGGTTACATGTTTATACCCATGGGGATTTTGAAGAATCTGACGAACAATTCAGGTCAAGGCCAAGGGGAGGGCGAAAGAGAAAGTGTCCTACAGTTGAAATGTTAGTTAGGAAGAGGGTTACTCCTCCTGATCAATTGGAGCACTGCTTGTTTGGAGAGGATACAGAGTAA 801 0.4157 MDDCQASYRRKDHLTRHLLQHKGKTFKCPLEDCNRDFAFQGNMTRHVKEFHNENSTPAKVEAQKQYKCPEIGCGKVFKFASKLQKHENCHVKLDSVEVVCLDPGCIKHFTNVQCLKVHIKTCHQHVTCETCGKKELKKNIKRHLRLHEKCSSSEAFKCEHKGCSSTFTSKSNLHQHVKAVHFKEKPFVCGFPDCGKRFSYKHVRDNHEKTGLHVYTHGDFEESDEQFRSRPRGGRKRKCPTVEMLVRKRVTPPDQLEHCLFGEDTE 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g2287 266 ProSitePatterns Zinc finger C2H2 type domain signature. 158 181 IPR013087 -
Prci6g2287 266 Gene3D Classic Zinc Finger 130 184 - -
Prci6g2287 266 Gene3D Classic Zinc Finger 185 210 - -
Prci6g2287 266 ProSiteProfiles Zinc finger C2H2 type domain profile. 156 186 IPR013087 -
Prci6g2287 266 SUPERFAMILY beta-beta-alpha zinc fingers 7 53 IPR036236 -
Prci6g2287 266 ProSitePatterns Zinc finger C2H2 type domain signature. 189 213 IPR013087 -
Prci6g2287 266 ProSiteProfiles Zinc finger C2H2 type domain profile. 187 213 IPR013087 -
Prci6g2287 266 SMART c2h2final6 98 123 IPR013087 -
Prci6g2287 266 SMART c2h2final6 66 90 IPR013087 -
Prci6g2287 266 SMART c2h2final6 126 147 IPR013087 -
Prci6g2287 266 SMART c2h2final6 187 213 IPR013087 -
Prci6g2287 266 SMART c2h2final6 2 21 IPR013087 -
Prci6g2287 266 SMART c2h2final6 26 51 IPR013087 -
Prci6g2287 266 SMART c2h2final6 156 181 IPR013087 -
Prci6g2287 266 SUPERFAMILY beta-beta-alpha zinc fingers 63 90 IPR036236 -
Prci6g2287 266 ProSiteProfiles Zinc finger C2H2 type domain profile. 26 56 IPR013087 -
Prci6g2287 266 Gene3D Classic Zinc Finger 2 59 - -
Prci6g2287 266 ProSitePatterns Zinc finger C2H2 type domain signature. 68 90 IPR013087 -
Prci6g2287 266 ProSitePatterns Zinc finger C2H2 type domain signature. 100 123 IPR013087 -
Prci6g2287 266 PANTHER ZINC FINGER PROTEIN 1 254 - -
Prci6g2287 266 SUPERFAMILY beta-beta-alpha zinc fingers 139 198 IPR036236 -
Prci6g2287 266 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 95 IPR013087 -
Prci6g2287 266 Pfam Zinc finger, C2H2 type 26 51 IPR013087 -
Prci6g2287 266 Pfam Zinc finger, C2H2 type 66 87 IPR013087 -
Prci6g2287 266 ProSitePatterns Zinc finger C2H2 type domain signature. 28 51 IPR013087 -
Prci6g2287 266 Gene3D Classic Zinc Finger 60 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g2287 Prci-Chr6 33359360 33362027 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g2287 1 216 C2H2 Transcription Factor Family AT1G72050 51.866 4.69e-90 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci6g2287 zf-C2H2 0.0016 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g2287 K09191 - qsa:O6P43_001489 433.335