Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g2282 ATGGATGACTGTCAAGCGAGTTACAGAAGAAAGGACCACTTGACTCGTCACCTTCTGCAACATAAAGGGAAAACTTTTAAATGTCCACTTGAGGATTGTAACCGTGACTTTGCTTTCCAAGGGAATATGACCAGACATGTCAAAGAATTTCATAATGAGAATTCCACCCCGGCCAAAGTTGAAGCTCAGAAGCAGTATAAATGCCCAGAAATTGGCTGTGGAAGGGTTTTCAAATTTGCTTCAAAGCTACAAAAGCATGAAAATTGTCATGTTAAGCTGGACTCAGTAGAGGTAGTCTGCTTGGATCCTGGTTGTATAAAACATTTTACCAATGTCCAGTGCCTTAAAGTCCATATCAAAACCTGTCATCAACATGTAACCTGTGAAACTTGTGGGAAAAAGGAACTGAAGAAGAATATCAAGCGGCACCTCCGGTTGCATGAAAAATGTTCTTCATCAGAGGCGTTCAAATGTGAACACAAGGGTTGTAGCAGCACATTCACTAGTAAATCCAATCTTCACCAGCATGTAAAGGCTGTCCACTTCAAAGAAAAACCATTTGTGTGTGGCTTTCCTGATTGTGGCAAGAGATTTTCCTACAAACACGTGAGAGACAACCACGAAAAAACTGGGTTACATGTTTATACCCATGGGGATTTTGAAGAATCTGACGAACAATTCAGGTCAAGGCCAAGGGGAGGGCGAAAGAGAAAGTGTCCTACAGTTGAAATGTTAGTTAGGAAGAGGGTTACTCCTCCTGATCAATTGGAGCACTGCTTGTTTGGAGAGGATACAGAGTAA 801 0.417 MDDCQASYRRKDHLTRHLLQHKGKTFKCPLEDCNRDFAFQGNMTRHVKEFHNENSTPAKVEAQKQYKCPEIGCGRVFKFASKLQKHENCHVKLDSVEVVCLDPGCIKHFTNVQCLKVHIKTCHQHVTCETCGKKELKKNIKRHLRLHEKCSSSEAFKCEHKGCSSTFTSKSNLHQHVKAVHFKEKPFVCGFPDCGKRFSYKHVRDNHEKTGLHVYTHGDFEESDEQFRSRPRGGRKRKCPTVEMLVRKRVTPPDQLEHCLFGEDTE 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g2282 266 ProSitePatterns Zinc finger C2H2 type domain signature. 158 181 IPR013087 -
Prci6g2282 266 ProSiteProfiles Zinc finger C2H2 type domain profile. 156 186 IPR013087 -
Prci6g2282 266 PANTHER ZINC FINGER PROTEIN 1 254 - -
Prci6g2282 266 ProSitePatterns Zinc finger C2H2 type domain signature. 189 213 IPR013087 -
Prci6g2282 266 Gene3D Classic Zinc Finger 2 53 - -
Prci6g2282 266 Gene3D Classic Zinc Finger 54 126 - -
Prci6g2282 266 ProSiteProfiles Zinc finger C2H2 type domain profile. 187 213 IPR013087 -
Prci6g2282 266 SUPERFAMILY beta-beta-alpha zinc fingers 139 198 IPR036236 -
Prci6g2282 266 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 95 IPR013087 -
Prci6g2282 266 ProSiteProfiles Zinc finger C2H2 type domain profile. 26 56 IPR013087 -
Prci6g2282 266 ProSitePatterns Zinc finger C2H2 type domain signature. 68 90 IPR013087 -
Prci6g2282 266 ProSitePatterns Zinc finger C2H2 type domain signature. 100 123 IPR013087 -
Prci6g2282 266 Gene3D Classic Zinc Finger 127 186 - -
Prci6g2282 266 SUPERFAMILY beta-beta-alpha zinc fingers 7 53 IPR036236 -
Prci6g2282 266 Gene3D Classic Zinc Finger 187 210 - -
Prci6g2282 266 SMART c2h2final6 98 123 IPR013087 -
Prci6g2282 266 SMART c2h2final6 66 90 IPR013087 -
Prci6g2282 266 SMART c2h2final6 187 213 IPR013087 -
Prci6g2282 266 SMART c2h2final6 126 147 IPR013087 -
Prci6g2282 266 SMART c2h2final6 2 21 IPR013087 -
Prci6g2282 266 SMART c2h2final6 26 51 IPR013087 -
Prci6g2282 266 SMART c2h2final6 156 181 IPR013087 -
Prci6g2282 266 Pfam Zinc finger, C2H2 type 26 51 IPR013087 -
Prci6g2282 266 Pfam Zinc finger, C2H2 type 66 87 IPR013087 -
Prci6g2282 266 ProSitePatterns Zinc finger C2H2 type domain signature. 28 51 IPR013087 -
Prci6g2282 266 SUPERFAMILY beta-beta-alpha zinc fingers 63 90 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g2282 Prci-Chr6 33329713 33332383 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g2282 1 216 C2H2 Transcription Factor Family AT1G72050 51.493 1.36e-89 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci6g2282 zf-C2H2 0.0016 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g2282 K09191 - qsa:O6P43_001489 432.18