Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g2242 ATGAGCATGTTAGGCCTGCGAGACCTACTTCTCATAGCTCCAAATTCTTCTCTTCACCACCACCAGCAACAACAACCACCACCACCTCAACAGGACCATTCGAACCTTCATCCTCTTCCTTCTTCTGCTTCTCTCAGCGTCGGTCTCGGCATTTTCCCTCTCCTTACTACCACTCCTTGCGTTCCCAATGACCTTCCGCACGATTCCGCGGATCACAATCATCAGAATACTGCCGGTAATTCCAATTTCTGGAACCTTAAGATGTGTCCGGAAGTTGGGAATTCTGCGAAGAAGGGAATGATCGATGTGGATGGTGAAGAGAATGGGATTTTTGGGGGTGATTTTAGGGTCTGTCAGGATTGTGGGAATCGCGCCAAGAAAGATTGTGGGTATAGACGATGCAGGACTTGTTGTAAGGGACGTGGGTACGATTGCCGCACTCATATCAAGAGCACGTGGGTCCCCGCCGCTCGCCGCCGCGAGAGGCAGATGACAGTTCCTGCTGCCGCCGGAGGTGGCGGTGGTGCTTCTGGGTCACCTCCCGGTTCTAAGAGGCCTCGAGCGTTCGGGTCGTTACAGAATGTTGCTACTACTTCTCATAGTTCTGCCTCCAACGCTACCACGCCAAGAAGCTTAGATACTAGCTCTCGTCACCAAGATGTTAGCTTCAAACATTCTTTACCAGGTCATGTTCGTGCCCCTGCGGTATTCAGGTGCCATCGAGTGTCGGCTATTGGTAATGGGGAAGATGAGCTTGCGTACATGGCCACAGTCCATATCAGTGGCCATGTTTTCAAGGGGTTTCTGTATGATCAAGGTGCTGGTGGAAAAATCACAATCCCATGTGTTTCTGAACTTCAACTGGGAAATTATAGCAGTGAGAAGAATAGGGAATGTTCTTCTCCAATAGGGGTTCCAACTAATAATGCTTACCCTGCTTCTGGATGTTGA 951 0.5005 MSMLGLRDLLLIAPNSSLHHHQQQQPPPPQQDHSNLHPLPSSASLSVGLGIFPLLTTTPCVPNDLPHDSADHNHQNTAGNSNFWNLKMCPEVGNSAKKGMIDVDGEENGIFGGDFRVCQDCGNRAKKDCGYRRCRTCCKGRGYDCRTHIKSTWVPAARRRERQMTVPAAAGGGGGASGSPPGSKRPRAFGSLQNVATTSHSSASNATTPRSLDTSSRHQDVSFKHSLPGHVRAPAVFRCHRVSAIGNGEDELAYMATVHISGHVFKGFLYDQGAGGKITIPCVSELQLGNYSSEKNRECSSPIGVPTNNAYPASGC 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g2242 316 Pfam Domain of unknown function (DUF702) 117 274 - -
Prci6g2242 316 NCBIfam putative zinc finger domain, LRP1 type 117 159 IPR006510 -
Prci6g2242 316 MobiDBLite consensus disorder prediction 165 221 - -
Prci6g2242 316 NCBIfam LRP1 C-terminal domain 227 273 IPR006511 -
Prci6g2242 316 MobiDBLite consensus disorder prediction 190 216 - -
Prci6g2242 316 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 30 301 IPR007818 GO:0003700|GO:0006355
Prci6g2242 316 MobiDBLite consensus disorder prediction 17 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g2242 Prci-Chr6 32140852 32144865 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g2242 1 311 C2H2 Transcription Factor Family AT5G12330 40.061 4.75e-59 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Prci6g2242 DUF702 2.8e-56 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g2242 - - gmx:100806835 386.341