Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g2146 ATGAGGAAGAAACTTGATACCCGTTTTCCTGCTGCTCGGATAAAGAAGATAATGCAAGCAGATGAAGATATTGGAAAAATAGCACTAGCAGTGCCTGTTTTAGTCTCAAAAGCTCTCGAGCTATTTTTACAAGATCTTTGTGACCATACTTATGATATAACTCTTCGTAGAGGAGCAAAGACCATGAGTGCATTGCATTTGAAGCATTGTGTACAAAGCTACAATGTTTTTGATTTTCTGAGGGATGTCGTGAGCAGGGTTCCTGACTATAGTCAAGGGTGTGGGCATGGTCATTCTGAATCTGGTGCTGATGATCGGGTTGTTTCAAAGAGAAGCAGGAAAGCTGCTGGTTATAATCACAGCGACAGTGATGAGGAATCTAAGAGGAGCAAGATGCATGAGTTGAACCACACAGGCAATACTGGAAGGGGAAGGGGAAGAGGTCGAGGTAGGGGAAGAGGTCGAGGTAGGGGCGCTCGAATTGTCGAAAGAGATAACTATCATCAGGAGGTTGAACCTGAGCCTTGCACCTTTTTTCAACAGAGCATCAAACATAATCCAAACACAAGTGTGATAGAGGAAAATGGTTCAGCTTATCCAAAAAAAGAAGAAAATGGTTCAGAGTTAAAGGAGTCACGGAAGGAAAATACTGTAGTTCCTGGTGAAGAAGGATCTCAGTCTCTCACTAATGTTGATTTGAACTCCAAAACTAATGAAAATGTAGGCAAAAATGCTGGCACAACTGCTCATGCCTCAGAGCCTGAACCTGCAACTGAGACCGAGCATGAAGATATCCCTGGCTGGTCCATTTCTGACATCGACAAGATGGCCATTGACTCTATGCAGCTTGTGCAGCTTGGTAGACGATTAGAAGAGGAAGAGGAAGATTATGATGAGGAAGGGTAA 906 0.4338 MRKKLDTRFPAARIKKIMQADEDIGKIALAVPVLVSKALELFLQDLCDHTYDITLRRGAKTMSALHLKHCVQSYNVFDFLRDVVSRVPDYSQGCGHGHSESGADDRVVSKRSRKAAGYNHSDSDEESKRSKMHELNHTGNTGRGRGRGRGRGRGRGRGARIVERDNYHQEVEPEPCTFFQQSIKHNPNTSVIEENGSAYPKKEENGSELKESRKENTVVPGEEGSQSLTNVDLNSKTNENVGKNAGTTAHASEPEPATETEHEDIPGWSISDIDKMAIDSMQLVQLGRRLEEEEEDYDEEG 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g2146 301 Coils Coil 283 301 - -
Prci6g2146 301 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Prci6g2146 301 MobiDBLite consensus disorder prediction 156 171 - -
Prci6g2146 301 MobiDBLite consensus disorder prediction 175 195 - -
Prci6g2146 301 MobiDBLite consensus disorder prediction 219 254 - -
Prci6g2146 301 MobiDBLite consensus disorder prediction 197 218 - -
Prci6g2146 301 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Prci6g2146 301 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 130 - -
Prci6g2146 301 SUPERFAMILY Histone-fold 4 89 IPR009072 GO:0046982
Prci6g2146 301 MobiDBLite consensus disorder prediction 99 140 - -
Prci6g2146 301 MobiDBLite consensus disorder prediction 91 269 - -
Prci6g2146 301 FunFam dr1-associated corepressor homolog 1 86 - -
Prci6g2146 301 MobiDBLite consensus disorder prediction 255 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g2146 Prci-Chr6 28607216 28613884 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g2146 1 290 CCAAT-HAP5 Transcription Factor Family AT3G12480 46.897 3.74e-71 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Prci6g2146 CBFD_NFYB_HMF 2.4e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g2146 K21752 - gmx:100810093 356.295