Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g2080 ATGGCGAACCTTTGTTTCCATTTCTCCTTCTCCATGTTCTTATTGCTTTGTCTCATGATTCACCCCACTTGTTGTCATACCAATTTCAGTACTGATGAATTGGCACTTCGTGCCTTTAGATTTTCTGTGAGAGACCCTTATAATCACTTGGATGATTGGACCAACTCTTCTTCCATCTGCAATTGGTTAGGGGTTACATGTGATTATAATTATGGGACAGTGAGGATCCTGGATCTTAGTGAAATGAGTCTTAAGGGAACCTTACCCTCACAAATTGGAAATCTATCTTTCCTTGTGAAGCTCGACCTTCACAGCAACAACTTTTATGGTGAGTTGCCAAAAGAGTTATTCCAACTACGCAAGTTGAAAATTCTCAACTTGAGCTATAATGCATTCAATGGAGTAATCCCAACTTGGATCGGAAGCTTGTCTGCACTTCAACACTTGATTCTCAACAACAATAGTTTTGATGGTGTTATTCCTTCAAGTATATCCAATTTGTCAAAGTTGGAGAGCTTGGAATGCAGATCCAATTTTATAAAAGGTTCCATTCCATTTGAAATTGTAAGACTTGGGAGATTGAAGATTTTGCGCATTTCAGTAAACAACCTTTCAGGAATAATACCTTCAGCTGTTTCTAATTTATCCTCACTTGAGCATATCATTTTATCTTACAACTTTTTATCAGGGAATATTCTTGAAACAATTGGTGCTCTCACAAACCTGAAAATAATAAGCCTAAGTGTTAACAAGTTGTCTGGCCAAATACCAAGAAGTATTGGAAACTTAACTTTGCTTCAAGAATTATATCTCGATCACAATAACTTAGAAGGAGGTATTCCTGAACAGATTGGTAATCTTAAAAGTCTGAAAATTCTATATTTAGACACCAATCAATTTTCTGGCCACTTACCATCAACTATCTTTAATCTATCTGAACTGCAAGTGATTGATTTAAGTTGGAACAATTTGTCGGGAGCCATTCCCTCAAATATATGTCATGGCCTTCCAAATTTACAAGCTTTGCTTCTTCAAGCCAACAAATTATTTGGAGCTATGCCATATGGTTGGACACAATGCAAGCAGCTCAAAACGTTAGAGTTAGAAGTCAACTTCTTTACAGGCCGTATACCCAAAAGCATCACAAACTTGACTATGCTTCAACAGTTAACTATGCATTCCAATAACTTGAAAGGCATTATCCTTTTAAGGCATAAACGACAACAAAATTCAAGGGGTCTAGTCAAAATTGATTTATCAATTTTAGGACTGCCCAAAAGGATTTCTTATTTTGAAATCCAAGAAGCAACCAATGGATTTGATGAGAGTAACATACTTGGAAGGGGTAGTTATGGTTCTGTGTTCAAAGGAAAACTTTCCAGTGAAATGATCATTGCAGTTAAGATCTTCAAATTTGATTCACATGTAATGTTAAGGAGCTTTGAAAAAGAATGTGACATATTGCGTAATGCTCGCCATCGCAATTTGGTGAAGCCGAGCAACATTTTATTGGATAATGAAATGGTTGCTCATGTTAGTGACTTTGGAATTTCCAAACTTTTAGACAAAGAGGAATCTAAGACAAACACAGAGACAGTACCTACTATTGGCTATGTGGCACCTGAGTATGGATATTTTGGAGTTGTTTCAACAAAAGTAGATGTGTATAGTTATGGAATTATGCTATTAGAGGTGTTTACAAGAAAAAGGCCCACAGAAGATATGTTTGTTGAAGGATTGAACTTGAAGAGCTGGGATGGGGATGGGGTGCGTAAAGAAGAAGAAGATGATGATGCTGAAGGATGCGGAGCGACGCGCAGGGGGAACGCCGCGGAGAGGATCTGCTTCCAAAGCAAAGAGGGTTGCCGCTTAAGAGAATATGGATAA 1887 0.3763 MANLCFHFSFSMFLLLCLMIHPTCCHTNFSTDELALRAFRFSVRDPYNHLDDWTNSSSICNWLGVTCDYNYGTVRILDLSEMSLKGTLPSQIGNLSFLVKLDLHSNNFYGELPKELFQLRKLKILNLSYNAFNGVIPTWIGSLSALQHLILNNNSFDGVIPSSISNLSKLESLECRSNFIKGSIPFEIVRLGRLKILRISVNNLSGIIPSAVSNLSSLEHIILSYNFLSGNILETIGALTNLKIISLSVNKLSGQIPRSIGNLTLLQELYLDHNNLEGGIPEQIGNLKSLKILYLDTNQFSGHLPSTIFNLSELQVIDLSWNNLSGAIPSNICHGLPNLQALLLQANKLFGAMPYGWTQCKQLKTLELEVNFFTGRIPKSITNLTMLQQLTMHSNNLKGIILLRHKRQQNSRGLVKIDLSILGLPKRISYFEIQEATNGFDESNILGRGSYGSVFKGKLSSEMIIAVKIFKFDSHVMLRSFEKECDILRNARHRNLVKPSNILLDNEMVAHVSDFGISKLLDKEESKTNTETVPTIGYVAPEYGYFGVVSTKVDVYSYGIMLLEVFTRKRPTEDMFVEGLNLKSWDGDGVRKEEEDDDAEGCGATRRGNAAERICFQSKEGCRLREYG 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g2080 628 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 231 430 - -
Prci6g2080 628 Pfam Protein kinase domain 497 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci6g2080 628 Gene3D Transferase(Phosphotransferase) domain 1 499 598 - -
Prci6g2080 628 FunFam Leucine-rich repeat receptor-like kinase 34 142 - -
Prci6g2080 628 Gene3D Ribonuclease Inhibitor 31 143 IPR032675 -
Prci6g2080 628 ProSiteProfiles Protein kinase domain profile. 339 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci6g2080 628 SUPERFAMILY Protein kinase-like (PK-like) 418 588 IPR011009 -
Prci6g2080 628 PANTHER UNNAMED PRODUCT 110 575 - -
Prci6g2080 628 SMART LRR_typ_2 384 405 IPR003591 -
Prci6g2080 628 SMART LRR_typ_2 311 335 IPR003591 -
Prci6g2080 628 SMART LRR_typ_2 191 214 IPR003591 -
Prci6g2080 628 SMART LRR_typ_2 143 167 IPR003591 -
Prci6g2080 628 SMART LRR_typ_2 336 359 IPR003591 -
Prci6g2080 628 SMART LRR_typ_2 95 119 IPR003591 -
Prci6g2080 628 SMART LRR_typ_2 263 287 IPR003591 -
Prci6g2080 628 SMART LRR_typ_2 239 262 IPR003591 -
Prci6g2080 628 Gene3D Ribonuclease Inhibitor 232 331 IPR032675 -
Prci6g2080 628 Gene3D Ribonuclease Inhibitor 332 422 IPR032675 -
Prci6g2080 628 Pfam Leucine rich repeat 289 349 IPR001611 GO:0005515
Prci6g2080 628 Pfam Leucine rich repeat 98 155 IPR001611 GO:0005515
Prci6g2080 628 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 143 230 - -
Prci6g2080 628 Gene3D Ribonuclease Inhibitor 144 231 IPR032675 -
Prci6g2080 628 Pfam Leucine rich repeat N-terminal domain 31 68 IPR013210 -
Prci6g2080 628 Gene3D Transferase(Phosphotransferase) domain 1 423 498 - -
Prci6g2080 628 ProSitePatterns Protein kinases ATP-binding region signature. 446 468 IPR017441 GO:0005524
Prci6g2080 628 SUPERFAMILY L domain-like 54 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g2080 Prci-Chr6 25448701 25478578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g2080 493 594 Receptor kinase-like Gene Family AT1G08590 37.255 4.97e-15 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Prci6g2080 Pkinase 7.2e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g2080 - K13420 pcin:129314033 1231.47