Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g2023 ATGGACAAGCATAAATTTGATGCTCACCTTGCAGTTCAAGCCACATGTGTGGTTTTCTTGGCAATTTGTTTAAGAACATGTGAACAGATTGAAACAGAAGCCCTTCTAAGGTGGAAAGACAGTCTCCCAGATCAGCCAATCTTAAAGTCATGGGTCTCTCCAGCACAGAACTCAAGTGCAGCTCAAAGCCCTTGTTCATGGCGTGGAATAACATGTGATAATTCTTCAGGAAGTGTGATTGAAATAAACTTGGCTTACACTGGCCTTAAAGGTACCCTTCAATACTTGAGCTTCTCTGCATTTCCAAATCTTCTTCGTCTTGATCTTAAAACAAACAACCTCATTGGTAGTATACCAGAAAACATTGGGGTTCTCTCCAAACTGCAATACCTTGACCTTTCTACGAATTACCTCAATGGCACTTTACCTATTTCTCTTGCTAATTTGACTCAAGTTTACGAGCTTGATGTTTCACGAAACAATATTACCGGGACATTAGACCCTCGTCTTTTTCCTGATGGTTCTGATCAGCCCAAGAGTGGACTGATAGGGATCAGAAATCTTCTCTTTCAGGACACCCTGCTTGGTGGTAGAATTCCAGATGAAATAGGGAATATAAGAAACTTAACTGTGCTAGCCTTAGATGGGAATAGCTTCTATGGACCTATTCCTCCATCTCTTGGGAACTGTACACATTTAAGTGTTCTTAGAATGTCTGAAAACCAACTCTCAGGCATGATTCCTCCTAGTTTTGGTGGATTGACTAACCTATCTGAGGTGTTCTTACACATAAATAAATTAGATGGTCCTGTCCCACAAGAATTTGGAAACCTTTCATCTTTAACTGTCCTGCATCTTGCTGAAAACAACTTCACAGGAGAGCTACCACCGCAAGTGTGCAAAGGTGGTAAACTTGTCAATTTCACTGCTGAGCACAATAGTTTCACTGGCCCGATCCCAATAAGCTTGAGAAATTGCTCGTCATTATATAGGGTTCGGATGGAATATAACCAACTAAGGGGTTATGCAGATCAAGATTTTGGAGTGTATCCTAATCTTAGTTACATGGACTTTAGCTACAATAACGTGCAAGGTGAGATCTCTTCAAATTGGGCAAGATGCAAAAATTTGCAATATCTTGGTATGTCTGGAAATTCAATAGGTGGCACTATACCTGATGAGATTTTTCAGTTGAACCAACTAGCAAAGCTATATCTGTCCTCCAATCAAATATCAGGAGAGATTCCTTCACAAATAGGGAATTCCTCTAGCCTTTTCACTCTATCTTTGAGTGGCAACAAACTTTCAGGATTGATACCCGCAAGCATTGGAAAGTTTTCTAATTTGCAAACATTAGACCTGTCAGCAAACATGCTAAAAGGATCAATCCCTTATGAGATAGGGGAATGCTCAAACTTGTTGAGTTTAAATTTGAGCAACAATGAGTTGAATGGAACAATCCCATACCAAATTGGAAATCTGGCAGCCTTGCAAGTTCTTTTGGACTTCAGTTACAATTCACTTTCTGGCCAAATTCCATCTGATCTTGGTAAGCTCAAAAATTTGATAATCTTGAATATCTCTCACAACAATCTATCTGGTCCTATCCCCGATTCCCTTGGTGAATTGTTGAGCTTGTCAAGCATTAACCTCTCCCACAACAATTTGGAGGGTCACGTACCTAATAGTGGCATATTTAATTCTTCCTATCCAGTTGATTTACGTAACAACAAAGAATTATGTGGGAATATACAAGGCCTGCAATCTTGCAATGTCTCAGTCATAGAACCTGGAAGTGGAAGCAACAAGAAGAAAGTCATAGCAGCAATTGTTGGTTCGTTGGGAGGTGCACTGCTTGTTTCATCAGCTTTACTTTGCATTTTTGTTTTTGGCTGCAAGACAAGAGCTATGAAACAGATCCCGGCAAATGAGAACAAAAATCCATTTTCTATACTGCATTTCAATGGTAAAATTGTTTATCAAGACATAATTGAAGCCACTAAGAACTTTGATGACGCCTGCTGCATTGGGGAGGGAACATTAGGAAAAGTTTACCGAGCGCAGATGCCAGGAGGCCAAGTAGTTGCTGTAAAAAAGTTAGGATGTGAGGCAGATAGCTTAGACTTTGAAAGTGTAAAATCCTTTAAAAGTGAGATAGAAGCCATGATTGAGATACGTCACCGAAACATTGTTAAGTTGTATGGATTTTGCTTAGACCCCAGGCACACATTTCTGACTTATGAGTACATGGAAAAAGGAAGCTTACTTGATATGCTGACAAATGACCAAAAAGCTATTGAGTTAGATTGGCCAAAGAGAGTTATAATTGTCAAAGGAGTAGCGCAGGCTTTGTCTTACATGCATCATGATTGTAACCCACCAATAATCCACAGAGACATATCAAGCAAAAATGTATTATTGTCCGAAAATCTAGAAGCGCATATCTCAGACTTTGGCACTGCGAGGTTCCTGAAGCCAGATTCATCTATCTGGACTTCCTTTGCTGGCACATTTGGTTATGCTGCTCCAGAGCTTGCATACACAATGGCAGTGACTGAAAAGTGTGATGTGTTCAGCTTTGGCGTTTTAGCTTTTGAGATTCTCATGGGAAATCATCCAGCAGATCTAATTTCCCACTTACAAGCATCTGGTTTTCAAAACATCAACTTCAAAGATATTTTAGACCCACGTCTGTCACCTCCAACAAAGGAAAAAAGCTTGAAGGAATTGGCTATGATAAGTAATTTGGCTATTTCTTGTTTACAAACAAACCCCCAATCTCGACCAACAATGCAAAGCATAACTTACATGCTTGACAAGGAGACAGCTCATGATTCATGA 2841 0.3985 MDKHKFDAHLAVQATCVVFLAICLRTCEQIETEALLRWKDSLPDQPILKSWVSPAQNSSAAQSPCSWRGITCDNSSGSVIEINLAYTGLKGTLQYLSFSAFPNLLRLDLKTNNLIGSIPENIGVLSKLQYLDLSTNYLNGTLPISLANLTQVYELDVSRNNITGTLDPRLFPDGSDQPKSGLIGIRNLLFQDTLLGGRIPDEIGNIRNLTVLALDGNSFYGPIPPSLGNCTHLSVLRMSENQLSGMIPPSFGGLTNLSEVFLHINKLDGPVPQEFGNLSSLTVLHLAENNFTGELPPQVCKGGKLVNFTAEHNSFTGPIPISLRNCSSLYRVRMEYNQLRGYADQDFGVYPNLSYMDFSYNNVQGEISSNWARCKNLQYLGMSGNSIGGTIPDEIFQLNQLAKLYLSSNQISGEIPSQIGNSSSLFTLSLSGNKLSGLIPASIGKFSNLQTLDLSANMLKGSIPYEIGECSNLLSLNLSNNELNGTIPYQIGNLAALQVLLDFSYNSLSGQIPSDLGKLKNLIILNISHNNLSGPIPDSLGELLSLSSINLSHNNLEGHVPNSGIFNSSYPVDLRNNKELCGNIQGLQSCNVSVIEPGSGSNKKKVIAAIVGSLGGALLVSSALLCIFVFGCKTRAMKQIPANENKNPFSILHFNGKIVYQDIIEATKNFDDACCIGEGTLGKVYRAQMPGGQVVAVKKLGCEADSLDFESVKSFKSEIEAMIEIRHRNIVKLYGFCLDPRHTFLTYEYMEKGSLLDMLTNDQKAIELDWPKRVIIVKGVAQALSYMHHDCNPPIIHRDISSKNVLLSENLEAHISDFGTARFLKPDSSIWTSFAGTFGYAAPELAYTMAVTEKCDVFSFGVLAFEILMGNHPADLISHLQASGFQNINFKDILDPRLSPPTKEKSLKELAMISNLAISCLQTNPQSRPTMQSITYMLDKETAHDS 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g2023 946 FunFam Leucine-rich repeat receptor protein kinase MSP1 633 749 - -
Prci6g2023 946 SMART serkin_6 670 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci6g2023 946 ProSitePatterns Tyrosine protein kinases specific active-site signature. 795 807 IPR008266 GO:0004672|GO:0006468
Prci6g2023 946 FunFam Nuclear pore complex protein NUP107 28 171 - -
Prci6g2023 946 Gene3D Transferase(Phosphotransferase) domain 1 750 946 - -
Prci6g2023 946 SUPERFAMILY RNI-like 81 412 - -
Prci6g2023 946 Pfam Leucine rich repeat 400 459 IPR001611 GO:0005515
Prci6g2023 946 Pfam Protein kinase domain 675 934 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci6g2023 946 FunFam MDIS1-interacting receptor like kinase 2 750 944 - -
Prci6g2023 946 Gene3D Ribonuclease Inhibitor 266 593 IPR032675 -
Prci6g2023 946 Gene3D Ribonuclease Inhibitor 28 174 IPR032675 -
Prci6g2023 946 SUPERFAMILY Protein kinase-like (PK-like) 648 938 IPR011009 -
Prci6g2023 946 Pfam Leucine Rich Repeat 521 543 IPR001611 GO:0005515
Prci6g2023 946 Gene3D Phosphorylase Kinase; domain 1 632 749 - -
Prci6g2023 946 Pfam Leucine rich repeat N-terminal domain 31 73 IPR013210 -
Prci6g2023 946 SUPERFAMILY L domain-like 335 582 - -
Prci6g2023 946 ProSiteProfiles Protein kinase domain profile. 670 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci6g2023 946 SMART LRR_typ_2 398 422 IPR003591 -
Prci6g2023 946 SMART LRR_typ_2 101 125 IPR003591 -
Prci6g2023 946 SMART LRR_typ_2 543 568 IPR003591 -
Prci6g2023 946 SMART LRR_typ_2 149 173 IPR003591 -
Prci6g2023 946 SMART LRR_typ_2 278 302 IPR003591 -
Prci6g2023 946 SMART LRR_typ_2 446 470 IPR003591 -
Prci6g2023 946 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 279 594 - -
Prci6g2023 946 FunFam Leucine-rich repeat receptor protein kinase EMS1 182 274 - -
Prci6g2023 946 Gene3D Ribonuclease Inhibitor 178 265 IPR032675 -
Prci6g2023 946 PANTHER LEUCINE RICH REPEAT KINASE 2 227 941 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g2023 Prci-Chr6 20356238 20359830 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g2023 31 843 Receptor kinase-like Gene Family AT4G08850 41.338 0.0 635
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Prci6g2023 Pkinase 2.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g2023 - - aprc:113866080 1318.14