Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1996 ATGACAACACAAGCATCAACATCATCTTCCATCCGTGATCATTGGACTTACGATGTCTTTATCAATTTTAGAGGAGAAGATACTCGTTATGGTTTTACAGGAAATCTATATCATGATCTAACTAAAAAGGGAGTTCACACCTTCTTTGATGATGAGGAAATAAGAAAGGGAGATGAAATTACTCCAACACTTTACAAAGCAATCGAAGAATCTAGGATGGCCATATGTGTATTTTCTAAAAACTACGCGTCCTCAACATTTTGCCTTGACGAACTTGTCCACATCCATCAATGTTTTAAGAGAGATGGACGGAGAATTTGGCCAATCTTTTATGAAGTGGAGCCCTCAGAAGTGAGACTTCAAAAAGGGAACTATGCACAAGCTTTGGATGACCATAAAATTAAAAACAGAGTTGATGAAAACAAGATGCAAGGTTGGAAGCTTGCACTACATGAAGTGGCAAATATCTGTGGCAAACATCTCATGCCAAGGCATGGTCCATATGAATATCAATTAATTGAAGAGATTGTGAAAGAAATCTCTAGCAAAATCAACAGGCTCCCCTTACACGTCGATGATTATCTTGTTGGAATAGACCATAGATTGCAACAAATAAACCCTCAATTACAGCTTGAATCAAATGAAGAGGTCATCATGTTTGGAATTTATGGAATAGGGGGAATGGGTAAAACAACTATAGCTCGTGTCATGTATAACTCATTGGCAGATAATTTTGAAGGTCTATGCTTCCTCCATGATATTAAAGGAAACTCAAGTAGTTTGGAAAGAATGCAAGAGAGAATACTTTCAGAGATTTTAGAGATGGAGATTAAAATTGAAGATGTGAACAAAGGAGTTACAATTATAAAAAAGAGGCTCAAACAAAAGAAAATCCTTTTGATCCTTGATAATGTTGATAAGCATGGGCAATTGCAAAAATTAGCCGGTAACTGTGATTGGTTTGGTGCTGGTAGTAGGATCATTATTACGACGAGGGACAAACATTTACTTGAAAAACATGGAGTTGAGAGAAAATATGAGATTGGAGCATTGAATGATGAAGAATCTCTTAAATTATTAAGTTGGAAAGGTTTTAGAAGTATGCAAGTTCATGCAAGTCACAAGAAAGTTGTGGAAAGTTTGATGCATTATGTGCAAGGTCTTCCCTTAGCACTAGAAGTTATAGGCTCTAACTTGCAAGGTAAGACTGTGAGGGAGTGGGAATCTGCATTAAATCTATATGAAAGAATTCCCAATGAAAAAATTCATCAACTATTGAAAGTAAGCTACAATGGCTTAGAACCAGCTGAAAAAGAAATTTTTCTTGATATTGCTTGCTTCTTCAATGGCTTCGTGAATGGAAGTTTGAACTATGTTGAAGAAATGGAGAAACTTGTTCACAATATTGATCCATACTATAGTATTAGCGTGTTGGCAGACAAATGCCTTATAAAGATTCAGGATGGTTGTATTAAGATGCACGATTTAATACAAGATATGGGAAGAGAAATTGTTCGTCAAGAATCGCCAAACGAGCCCGGAAAACGCACTAGGTTATGGATCAATCAAGATATCGTTCATGTTTTGGAAAAAAATACAGGATCAGAAGAAGTTGGTATTATAATTTCAAGAGATCAATCCAAATGTATAGAAGTGAATTGGGATGGAAAAGCCTTCAAGAAGATGAAGAATCTCAAAATTCTTATGTTGAATCAGAATATGAAGTTTTTAGAAGGCCCCAAATATCTACCTAATAGTTTGAAAGTGTTGAGATGGCCGAGATATCCTTCATCATGTTTGCCACTCAACTTTCATCCAAAGGAACTTTTTGAATTGGATATGGGACTTGGTTGTCTAAAGTCAGTAGAAATGATTAAGAATGTCTCAAATCTGAGTGTTTTGAATCTTGGAGGTTGCCAATACATTACACAAATACCTAATTTATCTGGCCTCTCAAATTTAAAGGAATTGTGTGTTTACGGGTGCCAAAATTTAATTGCAATTGATGATTCTGTTGGAGAATTAACAAAACTTGAAACCTTGGATGTGCAAGCATGTGCAAAACTTAAAACCTTTCCCCATGGTATCAAGTCACCGTATCTTCAAAGGCTCGAACTTTCTGGTTGCAAAAGCCTGAAGTACTTTCCAGAAATACTAGAGAAAGTGCAACTAACTGAACTGTCTTTTTGGGAAACTGGAATAGAAGAACTTCCTTCAACTATTTGCAATCTTACTCAACTTGAGGAGATAACAATTAGTGGGAAAGTTGAGCCACCAAGTATGGATTTTCTGTTGCTAGAACAATGTGATAATTTTGATGAAGGTTGTGGAAAGTTGCTGAAGGAAGTGATTCTATTTCCAAACTTAGATATTGTTGACCTCACAGAATGTAATATATCAAGCAGTAAGAGCCTTCAAAGTTATCTTTCTTGGTTCTCCACCATGAGAGAGTTGAACTTGAGCAACAATGACTTTATTACAATTCTGCCAGCATGCATAAAAGAATGTCGCTTTTTGTGGAGGCTTAGTTTAGGTTGGTGCAGGCATCTGCGAGAAGTGGAAGGGATTCCACCAAACATAAAACAGTTGGATGCAGAAGGTTGCATATCATTGAGTTTAGAGTCGAGAAACTTAATCTTGAGTGAGCAGCTAATTATTGGGGCTGCAGTGATCAGAGATGTGGAGATTGTTGATGATGAGTGTTTTGAATTTCTGAAAACAGAATTCGTTGTGCCAGCATCAAGCATTCCAGAATGGTTCCATCACTGTAGCAAAGGAGCACCTTTTTCATTTTGGTTTCGTAACTCCTTTCCAACTCTATGTCTTTGTGCTCTTCCTAAATTTAATGGTGACATGGATTACAAACATAAATTCATAGATTTGGTCCCTAAAGTAGTAATTAATGGAGAAAGAATATCTACGATATTGGACAAATATGATACCACATTGTGGTCAGGAAGTTTATGGGATCAGGAACATATAATCATCTGTGATCTTCGAGAGGAATACTTTGATGGAGATGATGAAGTAATAGATGGATTACAAGAAGGTGTGTGGCATTATGTGGAGGTTTTCTTGTCATTTTCTCCATCACCACCTGATTGGATGGGTGTTGTGAAAGAGAGTGGAATCTATATACTGAAACAAGATTGTAACATGGAAGATATCCAATTCACTTGTCCTAAATTTAATTCAATTCCCATGAATATTGTCCAAGAAGAGCAACCAATGCTGAAAAAGAGGCGGTTGATGGAAGATAATGATCTTATTTCAATTCAAGATTCCATGAGTGTTGACCAAGAACTAGAAACCCCTGTTTCAGGTAAGAAGGATTTCCATAGCAATCTTCTGCAGCTACAAGAAATTGAATACGAAAGCAAAATGCAGACAATAAACATTCAATTTTCAAGTAGCGAAAGTGAAGAATCAGTTAAAGTAAGGAGGCTAAATAACAATATGCCACATCAACAAGATGAAGCTTTAACCAGTGATCAAATCACAGAGAGCTGTGAATATGTCATAAATGGCAAAGGAAAAGACATTGTACTCTACAAAGATGATCCCATTAATGGCAACAATATAACAGAGATGATCGGACAAGACTACCTATATGACTCAAATACCAAAGGCAGCATGACATGGGATCCAATGGAATGTGAACATGAAGGAACAAGTCATGCTAACAATAATAAGGATCCATGTGACCAGAGAAGACATCATCCATGCATGCGTGTCAATAATGATAGTCCTTCCACAGAAGAGCAACCAACGCTAAAAAGAGGTGGTTGA 3789 0.3666 MTTQASTSSSIRDHWTYDVFINFRGEDTRYGFTGNLYHDLTKKGVHTFFDDEEIRKGDEITPTLYKAIEESRMAICVFSKNYASSTFCLDELVHIHQCFKRDGRRIWPIFYEVEPSEVRLQKGNYAQALDDHKIKNRVDENKMQGWKLALHEVANICGKHLMPRHGPYEYQLIEEIVKEISSKINRLPLHVDDYLVGIDHRLQQINPQLQLESNEEVIMFGIYGIGGMGKTTIARVMYNSLADNFEGLCFLHDIKGNSSSLERMQERILSEILEMEIKIEDVNKGVTIIKKRLKQKKILLILDNVDKHGQLQKLAGNCDWFGAGSRIIITTRDKHLLEKHGVERKYEIGALNDEESLKLLSWKGFRSMQVHASHKKVVESLMHYVQGLPLALEVIGSNLQGKTVREWESALNLYERIPNEKIHQLLKVSYNGLEPAEKEIFLDIACFFNGFVNGSLNYVEEMEKLVHNIDPYYSISVLADKCLIKIQDGCIKMHDLIQDMGREIVRQESPNEPGKRTRLWINQDIVHVLEKNTGSEEVGIIISRDQSKCIEVNWDGKAFKKMKNLKILMLNQNMKFLEGPKYLPNSLKVLRWPRYPSSCLPLNFHPKELFELDMGLGCLKSVEMIKNVSNLSVLNLGGCQYITQIPNLSGLSNLKELCVYGCQNLIAIDDSVGELTKLETLDVQACAKLKTFPHGIKSPYLQRLELSGCKSLKYFPEILEKVQLTELSFWETGIEELPSTICNLTQLEEITISGKVEPPSMDFLLLEQCDNFDEGCGKLLKEVILFPNLDIVDLTECNISSSKSLQSYLSWFSTMRELNLSNNDFITILPACIKECRFLWRLSLGWCRHLREVEGIPPNIKQLDAEGCISLSLESRNLILSEQLIIGAAVIRDVEIVDDECFEFLKTEFVVPASSIPEWFHHCSKGAPFSFWFRNSFPTLCLCALPKFNGDMDYKHKFIDLVPKVVINGERISTILDKYDTTLWSGSLWDQEHIIICDLREEYFDGDDEVIDGLQEGVWHYVEVFLSFSPSPPDWMGVVKESGIYILKQDCNMEDIQFTCPKFNSIPMNIVQEEQPMLKKRRLMEDNDLISIQDSMSVDQELETPVSGKKDFHSNLLQLQEIEYESKMQTINIQFSSSESEESVKVRRLNNNMPHQQDEALTSDQITESCEYVINGKGKDIVLYKDDPINGNNITEMIGQDYLYDSNTKGSMTWDPMECEHEGTSHANNNKDPCDQRRHHPCMRVNNDSPSTEEQPTLKRGG 1262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1996 1262 ProSiteProfiles Leucine-rich repeat profile. 630 652 IPR001611 GO:0005515
Prci6g1996 1262 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 444 IPR027417 -
Prci6g1996 1262 Pfam NB-ARC domain 201 420 IPR002182 GO:0043531
Prci6g1996 1262 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 868 IPR044974 GO:0006952
Prci6g1996 1262 Pfam TIR domain 17 186 IPR000157 GO:0007165
Prci6g1996 1262 ProSiteProfiles TIR domain profile. 15 184 IPR000157 GO:0007165
Prci6g1996 1262 Gene3D - 181 344 IPR027417 -
Prci6g1996 1262 PRINTS Disease resistance protein signature 292 306 - -
Prci6g1996 1262 PRINTS Disease resistance protein signature 673 689 - -
Prci6g1996 1262 PRINTS Disease resistance protein signature 385 399 - -
Prci6g1996 1262 PRINTS Disease resistance protein signature 219 234 - -
Prci6g1996 1262 MobiDBLite consensus disorder prediction 1220 1244 - -
Prci6g1996 1262 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 158 IPR035897 -
Prci6g1996 1262 MobiDBLite consensus disorder prediction 1220 1262 - -
Prci6g1996 1262 SUPERFAMILY "Winged helix" DNA-binding domain 421 530 IPR036390 -
Prci6g1996 1262 SMART till_3 16 156 IPR000157 GO:0007165
Prci6g1996 1262 Gene3D - 13 180 IPR035897 -
Prci6g1996 1262 SUPERFAMILY L domain-like 506 877 - -
Prci6g1996 1262 Gene3D Ribonuclease Inhibitor 547 723 IPR032675 -
Prci6g1996 1262 Gene3D Ribonuclease Inhibitor 724 884 IPR032675 -
Prci6g1996 1262 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 186 - -
Prci6g1996 1262 Gene3D - 350 434 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1996 Prci-Chr6 19647422 19657427 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1996 17 818 WRKY Transcription Factor Family AT4G12020 29.599 8.09e-78 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1996 - - pcin:129312441 2538.07