Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1980 ATGGACGCTCTTGAATCGAACCCTAATCCTCCGCCGTTCCTTCCGTCCGAAACAGTCGCTTCGTACGATCATAACCCCACCCCACCGGCGGCGGAAAGCTTTGCATCGGATTTCCAGAAGCCGTATGAGCAAACTGCGAATTTCGGTTTTCAGAATTCTTCGAACACCCTAGCTTCGGATGGTCAAAACGTTAACGGTCAACCCCAATCTGCTACTGGGAATGGCAACGAGAACGGATTGGATAACAGTCAGGGCGGTGTCGGCAGCAATAGCAATTCGAAGCCTTTGAGTGTGAAGCCGTTAATTTCTGAAAACGCCGGGACCAACAATACCCAAAGTGGCACTGACAGGGATCACTCTGGTGGGGAAGAGGAAACTACAAGCAAACGTCGCCGCCGGAGTCGATGGGATCCGCAACCTGATTCCAATGACCAGAGTGGCGGTGAAACAGGTGGCGGAACGAAGAAGAGGAAGTCACGTTGGGCTGATGATGAGCCGAAGCCTGTGATTCAGCTTCCTGATTTCATGGGCGGTATTGAGTTTGATCCTGAAATTCAAGCTTTGAACAGTAGGCTTCTTGAGATTAGTCGAATGCTGCAATCTGGTCTACCTCTAGACGATCGCCCTGAAGGTGCTAGATCTCCTTCACCTGAACCTATATACGATAACATGGGAATTAGAATAAACACCAGGGAATATCGTGCCCGTGAAAGATTGCAAAAGGAGAGGCAAGAAATCATTTCTCAGATTATCAAGAAAAACCCCGCATTCAAGCCGCCTGCCGATTATAGGCCGCCGAAGCTTCAGAAGAAGCTATATATACCAATGAAAGAATATCCCGGTTACAACTTTATAGGGCTTATTATTGGTCCTCGAGGCAACACACAGAAGCGGATGGAAAGAGAAACTGGTGCTAAAATTGTGATCCGGGGTAAAGGGTCAGTAAAAGAGGGTAGACTGCAACAGAAGAGGGATTTGAAACCTGACCCGTCAGAGAATGAAGATTTGCATGTCCTTGTGGAGGCAGAAACACAAGAATCACTTGATGCTGCCGCAGGTATGGTGGAGAAGCTTTTGCAGCCTGTGGATGAGGTGTTGAATGAGCATAAGAGGCAACAGCTTAGGGAACTTGCAGCATTGAATGGTACAATTAGGGATGAAGAATATTGCCGGCTGTGTGGGGAGCCTGGCCATCGCCAATATGCATGTCCTACACGTACTTCTACATTTAAGAGTGAAGTGGTCTGTAAGCACTGTGGTGATGGTGGTCACCCAAGCATAGACTGTCCAGTGAAGGGAGCCACTGGCAAGAAGATGGATGACGAGTATCAGAACTTTTTGGCAGAGCTGGGAGGGACAGTTCCAGACTCAGCAATAAAGCAGAACAACACGTTGGCAATTGGTTCAGGCAATTCTGGAAGCAATCCTCCTTGGGCTAACAATTCCGGATCTACTGGTGGAACATCACAAGCAGGCTTAGGGGCTAATCCAGTTAAAAAGGAAATCGATGATACAAATTTGTATATTGGGTATTTGCCTCCCACTCTCGATGATGATGGTCTGATCCAATTGTTTCAACAATTTGGTGAGATTGTTATGGCAAAAGTCATAAAAGACCGGATGACTGGGTTGAGTAAAGGATATGGGTTTGTCAAGTATGCTGATGTCCAAATGGCGAATAATGCAATTATGGCGATGAATGGCTATCGCCTGGAGGGCAGAACCATTGCAGTGAGAGTTGCTGGTAAGCCTCCTCAGCCTACTGTACCTCCTGGCCCGCCAGCATCAGCCATGCCCACATATCCCATTTCAAGCCAGCCAGTTGGTGCCTATCCATCCCAACAATATGCTACTGGTGGTCCTCTCGGTACTGCACCCCCTGGAAGTTATGCCGGTGCCCCAGTTCCATGGGGGCCTCCCGTTCCTCCGCCATATACTCCTTATGCTCCTCCCCCACCTGGATCAACTATGTACCCTCCTATTCAAGGTCAATCTATGCCTCCATATGGTGTTCAGTATCCTCCAGTCCAGACGGCTCCTCCAGGTGCCCCATCCCAGCCTACAACTTCTAGCGAATCACAACAAAGTTTTCCTCCAGGAGTGCAGTCTGACAGTGGTACCTCTACTCAATCAACATCGGCAAATATTTTTGGGAGTTCACTACCTGCTATGCTATCGACTGCTCAACCTACATATGCTACATCTTATGGTTATCCGCCTTACTATGGTGCGGTTCCCCCTCCGCCTCCCCCACCTATCACAACTTCAGGCCATATGCCTTGGGCTGCCAATCCTACAGTGCCGCCTCCTGCGTCAACTGCAGAGAAGACGGGATATGGTGCAGATCAGTCTCAGAGCATAGGAAATGTGCCTTGGGCCACAAATCCTCCAATGCCACCCCCTACTTCAACTGCAGAGAAGACAACATATGGTGCAGATTCAGAGTATGAGAAGTTCATGGCAGAGATGAAATGA 2475 0.4885 MDALESNPNPPPFLPSETVASYDHNPTPPAAESFASDFQKPYEQTANFGFQNSSNTLASDGQNVNGQPQSATGNGNENGLDNSQGGVGSNSNSKPLSVKPLISENAGTNNTQSGTDRDHSGGEEETTSKRRRRSRWDPQPDSNDQSGGETGGGTKKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLDAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPDSAIKQNNTLAIGSGNSGSNPPWANNSGSTGGTSQAGLGANPVKKEIDDTNLYIGYLPPTLDDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADVQMANNAIMAMNGYRLEGRTIAVRVAGKPPQPTVPPGPPASAMPTYPISSQPVGAYPSQQYATGGPLGTAPPGSYAGAPVPWGPPVPPPYTPYAPPPPGSTMYPPIQGQSMPPYGVQYPPVQTAPPGAPSQPTTSSESQQSFPPGVQSDSGTSTQSTSANIFGSSLPAMLSTAQPTYATSYGYPPYYGAVPPPPPPPITTSGHMPWAANPTVPPPASTAEKTGYGADQSQSIGNVPWATNPPMPPPTSTAEKTTYGADSEYEKFMAEMK 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1980 824 MobiDBLite consensus disorder prediction 584 603 - -
Prci6g1980 824 FunFam splicing factor-like protein 1 260 388 - -
Prci6g1980 824 Gene3D - 388 441 - -
Prci6g1980 824 MobiDBLite consensus disorder prediction 38 116 - -
Prci6g1980 824 MobiDBLite consensus disorder prediction 777 792 - -
Prci6g1980 824 SMART rrm1_1 506 579 IPR000504 GO:0003723
Prci6g1980 824 SUPERFAMILY Retrovirus zinc finger-like domains 386 432 IPR036875 GO:0003676|GO:0008270
Prci6g1980 824 MobiDBLite consensus disorder prediction 683 714 - -
Prci6g1980 824 MobiDBLite consensus disorder prediction 1 171 - -
Prci6g1980 824 Gene3D - 474 580 IPR012677 -
Prci6g1980 824 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 507 576 IPR000504 GO:0003723
Prci6g1980 824 ProSiteProfiles Zinc finger CCHC-type profile. 390 404 IPR001878 GO:0003676|GO:0008270
Prci6g1980 824 MobiDBLite consensus disorder prediction 151 167 - -
Prci6g1980 824 Gene3D K Homology domain, type 1 265 387 IPR036612 GO:0003723
Prci6g1980 824 MobiDBLite consensus disorder prediction 584 600 - -
Prci6g1980 824 MobiDBLite consensus disorder prediction 313 333 - -
Prci6g1980 824 PANTHER RNA-BINDING PROTEIN RELATED 122 631 IPR045071 -
Prci6g1980 824 Pfam Splicing factor 1 helix-hairpin domain 157 264 IPR032570 -
Prci6g1980 824 Pfam KH domain 283 331 IPR004088 GO:0003723
Prci6g1980 824 FunFam splicing factor-like protein 1 485 587 - -
Prci6g1980 824 MobiDBLite consensus disorder prediction 464 495 - -
Prci6g1980 824 MobiDBLite consensus disorder prediction 769 812 - -
Prci6g1980 824 SMART kh_6 268 360 IPR004087 GO:0003676
Prci6g1980 824 SMART c2hcfinal6 389 405 IPR001878 GO:0003676|GO:0008270
Prci6g1980 824 SMART c2hcfinal6 415 431 IPR001878 GO:0003676|GO:0008270
Prci6g1980 824 FunFam splicing factor 1 388 441 - -
Prci6g1980 824 MobiDBLite consensus disorder prediction 117 139 - -
Prci6g1980 824 MobiDBLite consensus disorder prediction 204 223 - -
Prci6g1980 824 CDD KH-I_BBP 267 360 - -
Prci6g1980 824 MobiDBLite consensus disorder prediction 464 492 - -
Prci6g1980 824 MobiDBLite consensus disorder prediction 655 714 - -
Prci6g1980 824 SUPERFAMILY RNA-binding domain, RBD 501 595 IPR035979 GO:0003676
Prci6g1980 824 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 268 394 IPR036612 GO:0003723
Prci6g1980 824 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 505 583 IPR000504 GO:0003723
Prci6g1980 824 ProSiteProfiles Type-1 KH domain profile. 283 355 - -
Prci6g1980 824 Gene3D - 182 260 IPR047086 -
Prci6g1980 824 ProSiteProfiles Zinc finger CCHC-type profile. 416 430 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1980 Prci-Chr6 19407913 19412677 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1980 505 636 Eukaryotic Initiation Factors Gene Family AT3G16380 30.612 5.18e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1980 K13095 - qsa:O6P43_001652 1157.51