Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1972 ATGTCATCAACCATTGTTAAGATTTTCTTTCCACTTGCCTTATTTTCTTCAATTTTCTCAATATCTTCTTCTTCTTCATCTATAGACTTTTGGTGCAACCAAACTCCATATCCTGAGCCATGCAAATACCACATGATGAGCCACAGCCACCACAAATTTGAACCAAAACATCGATCCGAGTTTAGGAAAATGCTGGTTCAATCAGCCATGGAACAAGCTCAAGTCATGCGCGAGCAAGCACAAAATTATGGCCCAAATTTTGTAACCACAACACAGAGATTTGTGTTCAATGATTGTTTAAAGCTCAACGATAACACCATCTTCCATCTAAACCAAACCCTTCTAGCCCTGCACACTAGTAATTCTTGCTCATCCTTATTAGATGCACAAACATGGCTCAGTACTGCACTTACAAACATCGAAACTTGCCGGAGCAGCACGTCGCAGCTAAGAGTCAGAGAGTTCACAGCTCAAAACAATGTGAGTGACAATGTTAGGAGGATGATAAGCAATGTGTTAGCAGTTAATAATGGTGATATTGTGATGATGAAGCAACAGAATAATAACACACAGAAGAAAACGTGTGGGTTTCCAAGTTGGTTTTCTGGGCGTAACAGGTTATTGATAAGCTTGAAGCCATCATCTTTGAAGGCTAATATTGTGGTGGCTCAAGATGGTACGGGCCATTTTAAGACAGTTCAAGCCGCCATTGATGAAGCATCAAGGAGAACAGTGAAGACGAGGTTTGTGATACGTGTGAAGAGAGGGACTTATGAAGAGAATATTGAAGTTGATAAGGATAATGAAAATCTCATGATTGTTGGAGATGGAATGAATGTTACCATTATAACTAGTAATAGAAGCGTTAAAGATGGAATTACCCCTTCTATGTCTGCAACAGCAGGAATAGATGGTGCTCACTTCGTTGCACAAGATATTACTTTTAGAAACACTGCTGGTCCTGAGAAAGGCCAAGCCGTGGCCCTCCGATCAGCCTCCGATCTCTCAGTCTTCTACAGATGCTCCATCGAAGGATATCAAGACACACTAATGGCTCATGCACAACGTCAATTCTACAGAGACTGTCGAATTTTCGGCACTGTGGATTTCATTCGGGGCAATGCTGCAGCTGTTTTTCAAAACTGCATCATTCTCGTAAGAAGGCCACTTCAAGGGCAAGCAAACATGATTACGGCTCAAGGACGAGGCGACCCGTTTCAAAACACCGGAATATCAATCATCAATTCTCAGATTCGAGCCGCACCGGATCTCAGACCTGTTGTAGACTCGTATCAAACCTATTTGGGTAGGCCATGGCAGCAATACGCTAGAGTGGTGGTGATGAAAAGTTACATTGAAGGTTTGGTGAATCCACTAGGTTGGTCTCCATGGGGAGATAGTGATTTTGGTCAAGACACGTGTTATTTTGGGGAATATATGAACAATGGGGCTGGTTCATCAACGCAAAGTAGGGTTCAATGGCCTGGGTTTCATGTGATGACAAGCCAAAACGAGACACAACAATTTACTGTTGCTGGACTTCTTGCTGGTAGCATATGGTTGCCTCAAGCTGGTGTGCCTTTTGATATTGGTATTTAA 1599 0.424 MSSTIVKIFFPLALFSSIFSISSSSSSIDFWCNQTPYPEPCKYHMMSHSHHKFEPKHRSEFRKMLVQSAMEQAQVMREQAQNYGPNFVTTTQRFVFNDCLKLNDNTIFHLNQTLLALHTSNSCSSLLDAQTWLSTALTNIETCRSSTSQLRVREFTAQNNVSDNVRRMISNVLAVNNGDIVMMKQQNNNTQKKTCGFPSWFSGRNRLLISLKPSSLKANIVVAQDGTGHFKTVQAAIDEASRRTVKTRFVIRVKRGTYEENIEVDKDNENLMIVGDGMNVTIITSNRSVKDGITPSMSATAGIDGAHFVAQDITFRNTAGPEKGQAVALRSASDLSVFYRCSIEGYQDTLMAHAQRQFYRDCRIFGTVDFIRGNAAAVFQNCIILVRRPLQGQANMITAQGRGDPFQNTGISIINSQIRAAPDLRPVVDSYQTYLGRPWQQYARVVVMKSYIEGLVNPLGWSPWGDSDFGQDTCYFGEYMNNGAGSSTQSRVQWPGFHVMTSQNETQQFTVAGLLAGSIWLPQAGVPFDIGI 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1972 532 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 26 177 IPR035513 -
Prci6g1972 532 Gene3D Invertase/pectin methylesterase inhibitor family protein 22 178 IPR035513 -
Prci6g1972 532 Pfam Pectinesterase 219 517 IPR000070 GO:0030599|GO:0042545
Prci6g1972 532 CDD PMEI-like_3 31 177 - -
Prci6g1972 532 SUPERFAMILY Pectin lyase-like 216 531 IPR011050 -
Prci6g1972 532 Pfam Plant invertase/pectin methylesterase inhibitor 27 174 IPR006501 GO:0004857
Prci6g1972 532 NCBIfam pectinesterase inhibitor domain 6 177 IPR006501 GO:0004857
Prci6g1972 532 Gene3D - 213 532 IPR012334 -
Prci6g1972 532 FunFam Pectinesterase 213 532 - -
Prci6g1972 532 SMART PMEI_2 23 175 IPR006501 GO:0004857
Prci6g1972 532 PANTHER PECTINESTERASE 18 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1972 Prci-Chr6 19240344 19243238 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1972 25 528 Carbohydrate Esterase AT5G51500 55.118 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1972 K01051 - gmx:100807908 644.425