Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1953 ATGGTGAACCTTTGGCTTGAATTTTCCTTCTCCATGTTCTCACTGCTTTGTTATCTCACAGTCTACCCAACTTTATGTCACGCCAACTTCACCAGAAATGATGAATTGGCACTTCTTGCTTTCAAATTTTCTGTGAGAGACCCATTCATTCATTTGGCTAATTGGTCCAACTCTTCCTCCATTTGTAATTGGACTGGGGTTACTTGTGATGCTAATGGTGAGAGAGTAAGTATATTGAATCTTGCTGACATGAGTCTCATGGGCGCCTTACCCTCACAAGTGGGGAATTTGTCCTCCCTTGTTGAACTTGACCTTCATAACAACAACTTTCATGGTGAATTACCGATGGAGATGCTGCAATTACACAAGTTGAAAATTCTCGACTTGAGTCATAATGAATTTGATGGGAAAATTCCAGCTTGGATTGGAGGTTTATTTGCTCTTCAGCACCTGACTTTTCATAATAATAGTTTTGAGGGTGTTATTCCTCCAAGTGTGTCGAATTTGTCAAAGTTAGAGACCTTGGATTGGACCTCTAATTCTATCCATGGATCCATTCCTCCTGAGATTGGGAGTCTCCAACATTTAAAGATTTTACGTATAGAAGGGAACAATCTTTCAAGAAAAATACCTCCAACTATTTCTGGCTTATCCTTACTCGAGCAGATGTCTTTGTCATACAACTCCTTAATAGGAAATATTCCTCAAACAATTGGTTATCTAACAAACTTGAAAATAATATATCTTGGTGCTAACAAGTTGTCTGGCCAAATACCAAGGAATATTGGAAACTTGACGAAACTTCAAGAGCTAGACCTTGGTCAAAATAACATTGAAGGAAATATTCCTCAAACAATTGGTGAGCTCACAAACTTGAAAATTATACAATTCTTATCTAACAAGTTGTCTGGCCAAATACCAAGGAATTTTGGAAACTTGACAAAACTTCAACAGCTAGACCTTGGTGAAAATAACATTGAAGGAAATATTCCTCAAACAATTGGTGGTCTCACAAACTTGAAAAGCATATATCTAGGTGTGAACAACTTGTCTGGCCAAACACCACAGAATATTGGAAACTTGACAAAACTTCAAATGCTAGACTTTGATGAAAATAACATTGAAGGAGATATTCCCAAAGAGATTGGTAATCTTAAAAGCTTGACAATTCTATATTTAGACCTCAATCAGTTTTCTGGTCAAATACCGTCAACAATCTTCAATATATCTGAGTTGCAAGAGATTGATTTAAGTGGGAATAATTTGTCAAGAGGCATTCCTTCTAATATATGCAATGGACTTCCAAATTTACAATATTTGGCTCTTCAAGACAACAACTTATTTGGAGCTATACCATCTAGTTGGACACAATTCAAGCATCTCAAGATGTTAAAATTAGAAGGAAACTTTTTGACAGGAGATCTACCAGGAGATATTGGAAACTTAACTATGCTTCAAATGTTAACTCTTGGTTACAATAACTTAAAAGGTAATATTCCATCAAATTATGGGAACCTCACTAATTTGTATAAACTCTCTATAGAAGAAAACATTTTGATTGGAAGGATTCCAACAACAATTAGTAGCATACAAGATCTTCAGTATTTGAGTCTTAAAGGTAATAAGTTACATGGTGCAATCATTGAAGAGCTATGTGGAATGCCAAGACTTGCTTATTTATATCTAAGTGAGAACAAGTTTTCTAGATCAATACCGCATTGCATGGGAAATGTTACCTCCTTACGAGAACTTCACTTGGACACTAACGAGTTAACTTCAGAAATTCCCTTTTCTTTTTGGAATTTGAAGGACATATTGATCGTAAACTTGTCTTCAAATAGTTTAGTTGGAAATCTATCACTCAATATTGGCAACTTAAAAGCTCTTGTGTCATTGGATTTGTCAAGAAATCATATTTTAGGAATCATTCCCTCAACCATGGATGGCTTGCAAACTTTGCAAAATCTCTCCTTAGCATATAACAATTTGCAAGGAAGTATTCCCAAATCACTTGGAAATATTCCAAGTTTAATGAATTTGGACCTTTCCCATAATAATTTGTCTGGTGAGATTCCCAAAAATTTGGAGTCACTTGCTTATCTAAAGTTTATCAATCTCTCATTTAACAAACTACAAGGAGAAATTCCGAGCGGAGGTGTTTTCAAAAATTTGACTGCTGAATCTTTTATGATGAATGAAGCTCTTTGTGGTAAACAAGAACTAAAAGTACCTCTTTGTAGAAAAGGAAAAAGGTCATTCAATAAATCACTTTTAATGAAGTGCACATTACCCATATTTGTGTCAACAATTTTGATTGTTTTAGGCATCCTTCTTTTAAGACAAAGACAACCAAATTCATGGGATTCTTTTGAAAGGGATTCACCAAATTTAGGAGGACAAAGAAGGATTTCTTATTTTGAAATTCTAGAAGCAACTAATGGATTTGATGAGAGTAACTTTATTGGAAGTGGGAGTTATGGTGATGTGTTCAAAGGAAAGCTTTTGAATGGGATGATGGTTGCAATTAAAGTATTTAATTTTGATTCTGAGAAAATGTCAAGGAGCTTTGAAGTGGAATGCAACACAATGCGCAATGTGCGCCATTATAATTTGGTGAAGATCATAAGTAGTTGTTCCAATGTTGATTTCAAGTGCCTGATAATGGAGTTCATGCCTAAAGGGAGTCTTGAAAAATGGTTGTATTCTCATAACTATTGTTTGAATTTTCTACAAAGGCTGAATATAATGATAAATGTAGCATCTGCTTTGGAATATCTCCATCATGGCTTGTCAGCACCAATAGTTCATTGTGATATGAAGCCAAGTAACATTTTGTTGGATGGCGATATGGTTGCTCATGTGAGTGACTTTGGGATTTCCAAACTTTTAGATGAAGGGCAATCTAAAATACATACAGAGACGATACCTACAATTGGATATATCGCACCTGAATATGCATCTGCTGGAGTTGTTTCAATGAAAGTGGATGTGTATAGCTATGGAATTATATCAATAGAAGTGTTCACAAGAAAAAGACCAACAGAAGACATATTTGATTCAGGATTGAACTTGAAGAGTTGGGTAAGTAACTCAATGCCACATGAAATAATTAATATCATGGATTCCAATTTATTGCAGGGAGATGAACAATATATTGGTGATATATTGACTTCTACGTCCTGTATTTTTGAATTGGCATTAAATTGTTGCACTGATTTTCCTGAAATGCGAAGCAACATGACAAATGTTGTAGTGTCATTAAACAAGATCAAGAACATGATTATTCAAAGGCAACATCTTTGA 3303 0.35 MVNLWLEFSFSMFSLLCYLTVYPTLCHANFTRNDELALLAFKFSVRDPFIHLANWSNSSSICNWTGVTCDANGERVSILNLADMSLMGALPSQVGNLSSLVELDLHNNNFHGELPMEMLQLHKLKILDLSHNEFDGKIPAWIGGLFALQHLTFHNNSFEGVIPPSVSNLSKLETLDWTSNSIHGSIPPEIGSLQHLKILRIEGNNLSRKIPPTISGLSLLEQMSLSYNSLIGNIPQTIGYLTNLKIIYLGANKLSGQIPRNIGNLTKLQELDLGQNNIEGNIPQTIGELTNLKIIQFLSNKLSGQIPRNFGNLTKLQQLDLGENNIEGNIPQTIGGLTNLKSIYLGVNNLSGQTPQNIGNLTKLQMLDFDENNIEGDIPKEIGNLKSLTILYLDLNQFSGQIPSTIFNISELQEIDLSGNNLSRGIPSNICNGLPNLQYLALQDNNLFGAIPSSWTQFKHLKMLKLEGNFLTGDLPGDIGNLTMLQMLTLGYNNLKGNIPSNYGNLTNLYKLSIEENILIGRIPTTISSIQDLQYLSLKGNKLHGAIIEELCGMPRLAYLYLSENKFSRSIPHCMGNVTSLRELHLDTNELTSEIPFSFWNLKDILIVNLSSNSLVGNLSLNIGNLKALVSLDLSRNHILGIIPSTMDGLQTLQNLSLAYNNLQGSIPKSLGNIPSLMNLDLSHNNLSGEIPKNLESLAYLKFINLSFNKLQGEIPSGGVFKNLTAESFMMNEALCGKQELKVPLCRKGKRSFNKSLLMKCTLPIFVSTILIVLGILLLRQRQPNSWDSFERDSPNLGGQRRISYFEILEATNGFDESNFIGSGSYGDVFKGKLLNGMMVAIKVFNFDSEKMSRSFEVECNTMRNVRHYNLVKIISSCSNVDFKCLIMEFMPKGSLEKWLYSHNYCLNFLQRLNIMINVASALEYLHHGLSAPIVHCDMKPSNILLDGDMVAHVSDFGISKLLDEGQSKIHTETIPTIGYIAPEYASAGVVSMKVDVYSYGIISIEVFTRKRPTEDIFDSGLNLKSWVSNSMPHEIINIMDSNLLQGDEQYIGDILTSTSCIFELALNCCTDFPEMRSNMTNVVVSLNKIKNMIIQRQHL 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1953 1100 SMART LRR_sd22_2 530 553 - -
Prci6g1953 1100 SMART LRR_sd22_2 626 652 - -
Prci6g1953 1100 SMART LRR_sd22_2 313 339 - -
Prci6g1953 1100 SMART LRR_sd22_2 121 136 - -
Prci6g1953 1100 SMART LRR_sd22_2 193 219 - -
Prci6g1953 1100 SMART LRR_sd22_2 361 387 - -
Prci6g1953 1100 SMART LRR_sd22_2 265 291 - -
Prci6g1953 1100 SMART LRR_sd22_2 241 264 - -
Prci6g1953 1100 Gene3D Ribonuclease Inhibitor 435 753 IPR032675 -
Prci6g1953 1100 Gene3D Transferase(Phosphotransferase) domain 1 891 1099 - -
Prci6g1953 1100 Pfam Protein kinase domain 817 1083 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci6g1953 1100 SMART LRR_typ_2 97 121 IPR003591 -
Prci6g1953 1100 SMART LRR_typ_2 626 649 IPR003591 -
Prci6g1953 1100 SMART LRR_typ_2 674 698 IPR003591 -
Prci6g1953 1100 SMART LRR_typ_2 313 337 IPR003591 -
Prci6g1953 1100 SMART LRR_typ_2 434 458 IPR003591 -
Prci6g1953 1100 SMART LRR_typ_2 361 385 IPR003591 -
Prci6g1953 1100 SMART LRR_typ_2 145 169 IPR003591 -
Prci6g1953 1100 SMART LRR_typ_2 265 289 IPR003591 -
Prci6g1953 1100 SMART LRR_typ_2 241 264 IPR003591 -
Prci6g1953 1100 SMART LRR_typ_2 482 506 IPR003591 -
Prci6g1953 1100 SMART LRR_typ_2 193 217 IPR003591 -
Prci6g1953 1100 SMART LRR_typ_2 409 433 IPR003591 -
Prci6g1953 1100 SMART LRR_typ_2 554 577 IPR003591 -
Prci6g1953 1100 SMART LRR_typ_2 578 601 IPR003591 -
Prci6g1953 1100 FunFam Serine-threonine protein kinase plant-type 796 890 - -
Prci6g1953 1100 ProSitePatterns Protein kinases ATP-binding region signature. 821 843 IPR017441 GO:0005524
Prci6g1953 1100 ProSitePatterns Serine/Threonine protein kinases active-site signature. 934 946 IPR008271 GO:0004672|GO:0006468
Prci6g1953 1100 Gene3D Ribonuclease Inhibitor 359 434 IPR032675 -
Prci6g1953 1100 Gene3D Ribonuclease Inhibitor 285 358 IPR032675 -
Prci6g1953 1100 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 144 233 - -
Prci6g1953 1100 Gene3D Phosphorylase Kinase; domain 1 798 890 - -
Prci6g1953 1100 FunFam Leucine-rich repeat receptor-like kinase 35 143 - -
Prci6g1953 1100 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 891 1099 - -
Prci6g1953 1100 FunFam Piriformospora indica-insensitive protein 2 333 428 - -
Prci6g1953 1100 ProSiteProfiles Leucine-rich repeat profile. 676 699 IPR001611 GO:0005515
Prci6g1953 1100 ProSiteProfiles Protein kinase domain profile. 815 1100 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci6g1953 1100 SUPERFAMILY RNI-like 79 375 - -
Prci6g1953 1100 FunFam MDIS1-interacting receptor like kinase 2 isoform A 234 332 - -
Prci6g1953 1100 SUPERFAMILY Protein kinase-like (PK-like) 793 1087 IPR011009 -
Prci6g1953 1100 Pfam Leucine rich repeat 507 567 IPR001611 GO:0005515
Prci6g1953 1100 Pfam Leucine rich repeat 338 397 IPR001611 GO:0005515
Prci6g1953 1100 Pfam Leucine rich repeat 267 326 IPR001611 GO:0005515
Prci6g1953 1100 Pfam Leucine rich repeat 629 687 IPR001611 GO:0005515
Prci6g1953 1100 Pfam Leucine rich repeat 435 495 IPR001611 GO:0005515
Prci6g1953 1100 SMART serkin_6 815 1094 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci6g1953 1100 FunFam Leucine-rich repeat receptor-like protein kinase TDR 431 748 - -
Prci6g1953 1100 SUPERFAMILY RNI-like 343 717 - -
Prci6g1953 1100 Pfam Leucine rich repeat N-terminal domain 33 70 IPR013210 -
Prci6g1953 1100 Pfam Leucine Rich Repeat 123 145 IPR001611 GO:0005515
Prci6g1953 1100 Pfam Leucine Rich Repeat 412 432 IPR001611 GO:0005515
Prci6g1953 1100 Pfam Leucine Rich Repeat 195 217 IPR001611 GO:0005515
Prci6g1953 1100 Gene3D Ribonuclease Inhibitor 180 284 IPR032675 -
Prci6g1953 1100 PANTHER LEUCINE RICH REPEAT KINASE 2 406 1091 - -
Prci6g1953 1100 Gene3D Ribonuclease Inhibitor 31 179 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1953 Prci-Chr6 18754663 18776794 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1953 37 1091 Receptor kinase-like Gene Family AT5G46330 34.874 0.0 572
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Prci6g1953 Pkinase 7.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1953 - K13420 qsa:O6P43_031956 1038.1