Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1951 ATGCCGAAGAAGAAGCACAGCGACAGTGACGAAGAAGAAGACATCTTCTATTACCGCTATGCTTCCTCTTCAGCTTCTTCCGCACCGTCTTCAAACCCCAACAGAACCCTCAAGACTCACGGTGGCTCCGGCGGCCTAGCTCCCTCTAAATCTACCCTCTACGTCTCCAACCTCGACTTCTCCCTCACTAACTCCGACCTCCATACCCTCTTCTCTACCTTCGGCAAGATCGCCCGAGTCACTGTTCTCAAGGACCGAGTCACTCGCCAGAGCCGTGGCGTTGCTTTCATCCAATACGTTTCTCGCGATGATGCACAAAAAGCCGTGCGCGAGATGAACCGCAAAATCCTCAACGGTAGGACCTTGACTGCTTCCATCGCCGCCGATAACGGCCGAGCTCCGGAATTTATAAAGAAAAGGGTTTATAAGGATAAGAGTCGGTGTTATGAGTGTGGGGAATCAGGACATTTGTCTTATGAGTGTCCCAGGAATCAACTGGGGCCCAGGGAACGTCCGATTCCGAAGCGTGAACGACGTGGTGGGGGCGGAGGCGGTGGTGGGGGCGGGTACCGGCGGACCGAGGAGGATGATGACGATGGATCCGACGGTGGGGACCGGTTTGCGGATGATAATTGGGCTTCTATTGTGGATAATGGGGCGGATGAAAGGTTGCTGACTGGCAATGACAAGGTTGTGGAGAAGAAGAAGGCGAAGAAAGCAAGCTATTTCAGTGATGAGAGTGGTGACGAAGATGATTGA 759 0.5336 MPKKKHSDSDEEEDIFYYRYASSSASSAPSSNPNRTLKTHGGSGGLAPSKSTLYVSNLDFSLTNSDLHTLFSTFGKIARVTVLKDRVTRQSRGVAFIQYVSRDDAQKAVREMNRKILNGRTLTASIAADNGRAPEFIKKRVYKDKSRCYECGESGHLSYECPRNQLGPRERPIPKRERRGGGGGGGGGGYRRTEEDDDDGSDGGDRFADDNWASIVDNGADERLLTGNDKVVEKKKAKKASYFSDESGDEDD 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1951 252 ProSiteProfiles Zinc finger CCHC-type profile. 147 163 IPR001878 GO:0003676|GO:0008270
Prci6g1951 252 Gene3D - 138 172 - -
Prci6g1951 252 MobiDBLite consensus disorder prediction 159 252 - -
Prci6g1951 252 MobiDBLite consensus disorder prediction 223 245 - -
Prci6g1951 252 SUPERFAMILY RNA-binding domain, RBD 48 133 IPR035979 GO:0003676
Prci6g1951 252 SMART c2hcfinal6 147 163 IPR001878 GO:0003676|GO:0008270
Prci6g1951 252 SMART rrm2_1 52 125 IPR003954 GO:0003676
Prci6g1951 252 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 122 IPR000504 GO:0003723
Prci6g1951 252 CDD RRM_ZCRB1 50 125 IPR034219 -
Prci6g1951 252 FunFam U11/U12 small nuclear ribonucleoprotein 31 kDa protein-like 138 173 - -
Prci6g1951 252 Pfam Zinc knuckle 147 162 IPR001878 GO:0003676|GO:0008270
Prci6g1951 252 FunFam U11/U12 small nuclear ribonucleoprotein 31 kDa protein 1 135 - -
Prci6g1951 252 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 5 251 IPR044598 GO:0000398|GO:0005689
Prci6g1951 252 MobiDBLite consensus disorder prediction 23 46 - -
Prci6g1951 252 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 129 IPR000504 GO:0003723
Prci6g1951 252 SMART rrm1_1 52 125 IPR000504 GO:0003723
Prci6g1951 252 Gene3D - 38 207 IPR012677 -
Prci6g1951 252 SUPERFAMILY Retrovirus zinc finger-like domains 133 164 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1951 Prci-Chr6 18397125 18401345 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1951 51 127 Eukaryotic Initiation Factors Gene Family AT4G34110 31.169 2.63e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1951 K13154 - qsa:O6P43_008664 307.375