Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1918 ATGGCTCCATATTCATACTTGTACTCTATTTATATAGATCGACAAGATCAATCAATAATTCTCAATCACAAGCTGTGGAACAAGCGAAGGAACTTCAAAGAACTCTATCTCCTGAATTTCCAAGGCCTTCCTAAATATTTCTGCGAGGTGAATTTGCCCAAGACTGATTCTATGATTGTTTTGGAAGATGAGAGTGGAAAAGAATATAAAACAAAGTATCTTACCGATAAGATAGGTTTAAGTAGTGGTTGGAGAGGGTTTTCTACAGCTCATAATTTACATGAGGGTGACGTTTTAGTTCTCCATTTAATCCAACCTTTAAGGTTCAAGGTGTACATCATAAGATCTCATATGTCAAATGAAATGGATGCTGCTCTAAGCCTTCTATGTTTAAACAGTTGCATGCAACAACATGATCTTGATGTTCCTCAAGAAAATGACTTAAACAATAACAGAATGATATGTGATGCTATACCACTGTCAAATCACCTTGACTTCACAAGTGATGATTTAGAAGAAAATGTTGGTCTTGAAGCTTTGAATGGGATTGTATTGGCGAGATCTATGATCACTTTCCAACAAGTAACAAGTATTGATAATTTTAGCATCGTGGTTAATGGCTTGGTACTTGACTCCCAACTACCCCAACACCTCAAAACCAAATACTATGAACTTTGTTGTAGTCAGCAAATGTTTCTTCATGAGCATCTTCTTGGAGGTCAAAATTGTCAACTAGTCATTGGAATGATTCGTGAGATCATTAATATTTCTGATGCCATTAAAGCTAGCAAGATCACAACCCCTTCAAGTAGTTTTGTTGTGTGGCATAAAAAGTTAAAAGGCCTTGAAACATGGGGCATGAACGTTAGGTTCTTGCTTACTAGGCTAGAACAGCTTATGATTTTAGCTTCAGAACTTAAGAGCTACGAGGAGGCAAGGAAAGATCAAGAGCACATTGAAAAAGAAAAGAAAGATCTTGAAATAAAACTTGAAGAAGTTGAAGAAACAATAAAAAGACTTGATGGTGAGATTGACTCTCTAAATCTAAACCCTGAGATGTTGGAGGTTGAGTTTCAAGAACTTGCTAATGCTCATTGGTGA 1101 0.3633 MAPYSYLYSIYIDRQDQSIILNHKLWNKRRNFKELYLLNFQGLPKYFCEVNLPKTDSMIVLEDESGKEYKTKYLTDKIGLSSGWRGFSTAHNLHEGDVLVLHLIQPLRFKVYIIRSHMSNEMDAALSLLCLNSCMQQHDLDVPQENDLNNNRMICDAIPLSNHLDFTSDDLEENVGLEALNGIVLARSMITFQQVTSIDNFSIVVNGLVLDSQLPQHLKTKYYELCCSQQMFLHEHLLGGQNCQLVIGMIREIINISDAIKASKITTPSSSFVVWHKKLKGLETWGMNVRFLLTRLEQLMILASELKSYEEARKDQEHIEKEKKDLEIKLEEVEETIKRLDGEIDSLNLNPEMLEVEFQELANAHW 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1918 366 Pfam B3 DNA binding domain 42 115 IPR003340 GO:0003677
Prci6g1918 366 Gene3D - 12 118 IPR015300 -
Prci6g1918 366 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 34 117 IPR044837 -
Prci6g1918 366 SUPERFAMILY DNA-binding pseudobarrel domain 39 116 IPR015300 -
Prci6g1918 366 CDD B3_DNA 43 115 IPR003340 GO:0003677
Prci6g1918 366 ProSiteProfiles B3 DNA-binding domain profile. 43 117 IPR003340 GO:0003677
Prci6g1918 366 SMART B3_2 32 117 IPR003340 GO:0003677
Prci6g1918 366 Coils Coil 309 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1918 Prci-Chr6 17767041 17768818 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1918 42 115 B3 DNA Binding Superfamily AT3G19184 52.703 1.57e-19 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Prci6g1918 B3 2.2e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1918 - - pcin:129300984 625.55