Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1857 ATGACAAATCTTTGTTTTCATTTTTGTGTCTCCATGTCCTTATTACTACTTTGTCTCATGGTTTGTCCCATTATATGTAACACCACTTTTACCACTGATGACTCTGCAGTTCTTGCCCTCAAATTTTCAGTGACCGATCCTCACAATCACTTGGCTAATTGGTCCAACTCTTCTTCAATTTGCGATTGGACTGGTGTTATATGTGATTCCAATGATGGGAGAGTCAAGATCTTGAAACTTGGCGGGATGGGTCTCAAGGGCGCCTTACCCTCGCAAATTGGTAATTTGTCTTTTCTGGAGGAACTTGACCTTCACAGCAATAGTTTTTACGGAGTTATTCCTAAAGGAATCAGTAATCTGACAAATGTAAAGTACATATCTTTAAGTGGAAATCTGCTGTCTGGACAATTACCAAAAGGCATTGAAAACTTGACTATGCTTGAAGAGTTATATCTTTCTTACAATGACTTGCAAGGAAGTATTCCAAAAGAGATTGGTGAACTTCATAATTTGAAAACAATATCCTTGGGTGTTAATGAGTTTTTTGGTCAAATACCATCAACTATCTTCAACATTTCAGGGTTGCAACAGATGGATTTGAGTCAGAATAATTTGTCAGGGAGCATCCCCTCATATATATGTCATGGGATTCCAAAAATCCAATATCTGTCTCTTGAATTCAATGAATTGTCTGGTGCCTTACCATCTCAATGGATACAATGCAAGGATCTCAACATGTTTTCAGTAGCCTCCAATAGATTTAGTGGACACATTCCAAGGGAGATTGTAAACCTCACTATGCTTCAAGAATTATATTTGCCTGGAAACGTTTTCACAGGTACAATTCCTGTGGAAATAGGCAATCTTCATAAGCTTGAGAAATTAGAGTTGGCAATGAATGAATTGAGTGGATCTATTCCCTCAATAATTTTTAACATGTCAACTTTGAAACTCTTGTCTCTACAAAGCAATTTTCTGTCAGGTAGTCTTCCATCAAATTTTGGAAGTGGCCTTCCATATTTGGAACAACTGTATTTATGGGGAAACAGACTTTCTGGAAGAATCCCAAAGACTATATCCAATGCTTCTAAGCTAACAATGATGGAATTGGCATACAACAACTTTGAAGGGGCTTTACCTAGCACGATTGGGCATTTAATATACTTGAAAACCCTTCAATTATCTGCTAATGATTTAACCATTGTAGAAACTTCCAGTTCTGAAAACAACTTCCTTACCTCATTGACAAATTGTAGAAATTTGGAAGTCTTGGATCTCTCAATAAATCCATTGTATACAAAACTTTCCAAAGCCATTGGAAACTTCTCTCATTCCCTACAGAAGATGGATATGCACTCTTGCAAAATTAATGGCAACATACCCTCAGAGATTGGGAATCTTACTAATTTGATTAGACTATCTTTGGGTGAAAATAGTCTGACTGGACCACTTCCAAGGACTATCAGCAATTTAAAAGCTCTTCAGTTTTTGAATTTTGAAGGCAATCAGCTACAAGGCTTAATCGTTGATGAGATTTGTGAGATTAAGAGACTTGTTTATCTTTATCTAAGTTTAAACAAGTTTTCTGGAGCAATGCCAACTTGCATAGGAAATATGACTTCTTTGCAAAAGCTTTTTGTGGGCTCCAATAAATTGATTTCAGTTATACCTTCTTCCTTTTGGAACTTAAATGATATATTGGAAGTAAATTTATCTTCCAATATTTTAGTTGGAAATCTTTCATTCAAAATTGGAAACTTAAAAGCTCTTACGTTATTGGATTTGTCAAGAAATAATCTTTCAAGCATCATTCCTATAACATTGGGTGGCTTGCAGAATCTACAAATTCTCTCCTTAGCACATAACACATTGCAAGGGAATATTCCTGAAACATTTGGAAATTTGCTAAGCTTGGTAAAGTTGGACCTCTCCCAAAATAATTTGTCTGGTGAAATCCCTAAATCTCTAGAGTCACTTGTTTATCTTAAGAACATCAATCTCTCTTATAATAAATTGCATGGAGAGATTCCAAATGGTGGGGCTTTTAAAAATTTAACTTTTGAGTCTTTCATGATGAATGACGCTCTTTGTGGCCAACCACGGTTGAGAGTGCCTCCATGTAGAAATGGAATAAGAAAAGGATCAATGACTAAATTGATCTTATTAAAAATTATATTACCCATTGTTGTGTCAACAATTTTAGTTGTTTTAGGTATCATACTATGGTGGAAACGACCAAATTCAAAAAATGATCAAGTTGAAAGGAATTGTTCAACTTTAGGAGTACCAAGAAGGATTTCTTATTTTGAGATTGTAGATGCAACTAATGGATTTGATGAGAGTAACTTGATTGGCCGCGGTAGCTATGGTTCTGTGTTCAAAGGAAAGCTTTTCAATGGGATTGTAGTTGCAATTAAAATCTTCAATTTTGATTCAGAAATAATGTCAAGGAGCTTTGAAGTAGAATGTGATACAATGCGTAATGTGCGCCATCGCAATTTGGTGAAGATCATTAGTAGTTGCTCTAATATTGATTTCAAGTGTTTGATAATGGAGTTCATGCCCAAAGGGAGCCTTGAAAAATGGTTATATTCTCATAACTATTGTTTAGACTTTCTTGAAAGATTGAATATAATGATAAACGTAGCATCTGCCTTAGAGTATCTTCATCATGGCTTGTCAACACCAATAGTTCATTGTGATTTAAAGCCAAGTAACATCTTGTTGGATGATAATATGGTTGGTCATGTGAGTGACTTTGGAATTTCCAAACTTTTAGATGAAGGGCAATCAAAGACACATACAGAAACAATTCCTACAATTGGCTATGTCGCACCTGAATATGGATCTTCTGGAGTTGTTTCAACTAAAGTAGATGTATATAGCTATGGAATTATATTGAAAGAAGTCTTCACAAGGAAAAAACCAACCGACAATATGTTTGTTTCAGGATTGAGCTTAAAGGGTTGGGTAAGTGTGTCAATGCCACATGCAATAATTCAAGTCATAGACTCCAATTTATTACAAGAAGATGAACAACATGTTGATCATATCTTACAAGCCACATCCTCTATTTTTGAATTAGCCTTGAGTTGTTGTACTGATATTCCAGAAACACGTAGCAATATGATAGATGTTGTAGTGTCATTAAACAAGATCAAGGCCAAATTTATGCAAGGTCAGAAATGTCATATTTGA 3198 0.353 MTNLCFHFCVSMSLLLLCLMVCPIICNTTFTTDDSAVLALKFSVTDPHNHLANWSNSSSICDWTGVICDSNDGRVKILKLGGMGLKGALPSQIGNLSFLEELDLHSNSFYGVIPKGISNLTNVKYISLSGNLLSGQLPKGIENLTMLEELYLSYNDLQGSIPKEIGELHNLKTISLGVNEFFGQIPSTIFNISGLQQMDLSQNNLSGSIPSYICHGIPKIQYLSLEFNELSGALPSQWIQCKDLNMFSVASNRFSGHIPREIVNLTMLQELYLPGNVFTGTIPVEIGNLHKLEKLELAMNELSGSIPSIIFNMSTLKLLSLQSNFLSGSLPSNFGSGLPYLEQLYLWGNRLSGRIPKTISNASKLTMMELAYNNFEGALPSTIGHLIYLKTLQLSANDLTIVETSSSENNFLTSLTNCRNLEVLDLSINPLYTKLSKAIGNFSHSLQKMDMHSCKINGNIPSEIGNLTNLIRLSLGENSLTGPLPRTISNLKALQFLNFEGNQLQGLIVDEICEIKRLVYLYLSLNKFSGAMPTCIGNMTSLQKLFVGSNKLISVIPSSFWNLNDILEVNLSSNILVGNLSFKIGNLKALTLLDLSRNNLSSIIPITLGGLQNLQILSLAHNTLQGNIPETFGNLLSLVKLDLSQNNLSGEIPKSLESLVYLKNINLSYNKLHGEIPNGGAFKNLTFESFMMNDALCGQPRLRVPPCRNGIRKGSMTKLILLKIILPIVVSTILVVLGIILWWKRPNSKNDQVERNCSTLGVPRRISYFEIVDATNGFDESNLIGRGSYGSVFKGKLFNGIVVAIKIFNFDSEIMSRSFEVECDTMRNVRHRNLVKIISSCSNIDFKCLIMEFMPKGSLEKWLYSHNYCLDFLERLNIMINVASALEYLHHGLSTPIVHCDLKPSNILLDDNMVGHVSDFGISKLLDEGQSKTHTETIPTIGYVAPEYGSSGVVSTKVDVYSYGIILKEVFTRKKPTDNMFVSGLSLKGWVSVSMPHAIIQVIDSNLLQEDEQHVDHILQATSSIFELALSCCTDIPETRSNMIDVVVSLNKIKAKFMQGQKCHI 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1857 1065 PRINTS Leucine-rich repeat signature 590 603 - -
Prci6g1857 1065 PRINTS Leucine-rich repeat signature 635 648 - -
Prci6g1857 1065 FunFam Serine-threonine protein kinase plant-type 759 853 - -
Prci6g1857 1065 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 414 710 - -
Prci6g1857 1065 Gene3D Phosphorylase Kinase; domain 1 761 853 - -
Prci6g1857 1065 ProSitePatterns Serine/Threonine protein kinases active-site signature. 897 909 IPR008271 GO:0004672|GO:0006468
Prci6g1857 1065 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
Prci6g1857 1065 ProSitePatterns Protein kinases ATP-binding region signature. 784 806 IPR017441 GO:0005524
Prci6g1857 1065 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 413 1051 - -
Prci6g1857 1065 Gene3D Ribonuclease Inhibitor 406 713 IPR032675 -
Prci6g1857 1065 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 30 190 - -
Prci6g1857 1065 SMART LRR_typ_2 144 168 IPR003591 -
Prci6g1857 1065 SMART LRR_typ_2 587 610 IPR003591 -
Prci6g1857 1065 SMART LRR_typ_2 635 659 IPR003591 -
Prci6g1857 1065 SMART LRR_typ_2 96 120 IPR003591 -
Prci6g1857 1065 SMART LRR_typ_2 467 491 IPR003591 -
Prci6g1857 1065 SMART LRR_typ_2 539 562 IPR003591 -
Prci6g1857 1065 SMART LRR_typ_2 338 362 IPR003591 -
Prci6g1857 1065 SMART LRR_typ_2 611 634 IPR003591 -
Prci6g1857 1065 SMART LRR_typ_2 192 216 IPR003591 -
Prci6g1857 1065 SMART LRR_typ_2 289 313 IPR003591 -
Prci6g1857 1065 SMART LRR_typ_2 386 409 IPR003591 -
Prci6g1857 1065 SMART serkin_6 778 1058 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci6g1857 1065 SUPERFAMILY Protein kinase-like (PK-like) 757 1050 IPR011009 -
Prci6g1857 1065 SMART LRR_sd22_2 587 608 - -
Prci6g1857 1065 SMART LRR_sd22_2 539 565 - -
Prci6g1857 1065 SMART LRR_sd22_2 467 493 - -
Prci6g1857 1065 SMART LRR_sd22_2 120 146 - -
Prci6g1857 1065 SMART LRR_sd22_2 338 364 - -
Prci6g1857 1065 SMART LRR_sd22_2 635 661 - -
Prci6g1857 1065 SMART LRR_sd22_2 611 630 - -
Prci6g1857 1065 SMART LRR_sd22_2 289 315 - -
Prci6g1857 1065 SMART LRR_sd22_2 168 194 - -
Prci6g1857 1065 SMART LRR_sd22_2 418 444 - -
Prci6g1857 1065 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 214 404 - -
Prci6g1857 1065 Gene3D Transferase(Phosphotransferase) domain 1 854 1063 - -
Prci6g1857 1065 Pfam Protein kinase domain 779 1044 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci6g1857 1065 Pfam Leucine rich repeat 99 157 IPR001611 GO:0005515
Prci6g1857 1065 Pfam Leucine rich repeat 613 672 IPR001611 GO:0005515
Prci6g1857 1065 Pfam Leucine rich repeat 517 574 IPR001611 GO:0005515
Prci6g1857 1065 Gene3D Ribonuclease Inhibitor 32 144 IPR032675 -
Prci6g1857 1065 SUPERFAMILY L domain-like 444 700 - -
Prci6g1857 1065 SUPERFAMILY L domain-like 55 401 - -
Prci6g1857 1065 ProSiteProfiles Protein kinase domain profile. 778 1058 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci6g1857 1065 Gene3D Ribonuclease Inhibitor 145 237 IPR032675 -
Prci6g1857 1065 Gene3D Ribonuclease Inhibitor 238 334 IPR032675 -
Prci6g1857 1065 Gene3D Ribonuclease Inhibitor 335 405 IPR032675 -
Prci6g1857 1065 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 854 1062 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1857 Prci-Chr6 16558902 16568234 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1857 29 1062 Receptor kinase-like Gene Family AT3G47570 35.278 0.0 569
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Prci6g1857 Pkinase 4.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1857 - K13420 qsa:O6P43_031966 1024.23