Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1854 ATGACAAATCTTTGTTTTCATTTTTGTGTCTCCATGTCCTTATTACTACTTTGTCTCATGGTTTGTCCCATTATATGTAACACCACTTTTACCACTGATGACTCTGCAGTTCTTGCCCTCAAATTTTCAGTGACCGATCCTCACAATCACTTGGCTAATTGGTCCAACTCTTCTTCAATTTGCGATTGGACTGGTGTTATATGTGATTCCAATGATGGGAGAGTCAAGATCTTGAAACTTGGCGGGATGGGTCTCAAGGGCGCCTTACCCTCGCAAATTGGTAATTTGTCTTTTCTGGAGGAACTTGACCTTCACAGCAATAGTTTTTACGGTGAGTTGCCAAAAGAGTTACGGAAGTTAGACAAGTTAAGAATTCTCAACTTGAGCTACAATCAATTTAGTGGAGATATTCCATTATGGATAGGAAGCTTATTCACACTTCAACACTTGATTCTCGAAAAAAATAATCTTGGGGGTGTTATTCCTTTAAGCATATCCAATTTGTCAAAGCTGGAGACTTTAAATTGGAGATCTAATTTCATAGAAGGATCCATTCCACTTGAGATTGGAAGGCTTCAATACTTGAAGATTTTACGCATTTCATCAAACAACCTTTCAGGGATGATACCTCCAAGTGTTTTTAACTTATCCTCACTTGAGCAGATCATTTTGTCCAACAATTCCTTATCAGGAGTTATTCCTAAAGGAATCAGTAATCTGACAAATGTAAAGTACATATCTTTAAGTGGAAATCTGCTGTCTGGACAATTACCAAAAGGCATTGAAAACTTGACTATGCTTGAAGAGTTATATCTTTCTTACAATGACTTGCAAGGAAGTATTCCAAAAGAGATTGGTGAACTTCATAATTTGAAAACAATATCCTTGGGTGTTAATGAGTTTTTTGGTCAAATACCATCAACTATCTTCAACATTTCAGGGTTGCAACAGATGGATTTGAGTCAGAATAATTTGTCAGGGAGCATCCCCTCATATATATGTCATGGGATTCCAAAAATCCAATATCTGTCTCTTGAATTCAATGAATTGTCTGGTGCCTTACCATCTCAATGGATACAATGCAAGGATCTCAACATGTTTTCAGTAGCCTCCAATAGATTTAGTGGACACATTCCAAGGGAGATTGTAAACCTCACTATGCTTCAAGAATTATATTTGCCTGGAAACGTTTTCACAGGTACAATTCCTGTGGAAATAGGCAATCTTCATAAGCTTGAGAAATTAGAGTTGGCAATGAATGAATTGAGTGGATCTATTCCCTCAATAATTTTTAACATGTCAACTTTGAAACTCTTGTCTCTACAAAGCAATTTTCTGTCAGGTAGTCTTCCATCAAATTTTGGAAGTGGCCTTCCATATTTGGAACAACTGTATTTATGGGGAAACAGACTTTCTGGAAGAATCCCAAAGACTATATCCAATGCTTCTAAGCTAACAATGATGGAATTGGCATACAACAACTTTGAAGGGGCTTTACCTAGCACGATTGGGCATTTAATATACTTGAAAACCCTTCAATTATCTGCTAATGATTTAACCATTGTAGAAACTTCCAGTTCTGAAAACAACTTCCTTACCTCATTGACAAATTGTAGAAATTTGGAAGTCTTGGATCTCTCAATAAATCCATTGTATACAAAACTTTCCAAAGCCATTGGAAACTTCTCTCATTCCCTACAGAAGATGGATATGCACTCTTGCAAAATTAATGGCAACATACCCTCAGAGATTGGGAATCTTACTAATTTGATTAGACTATCTTTGGGTGAAAATAGTCTGACTGGACCACTTCCAAGGACTATCAGCAATTTAAAAGCTCTTCAGTTTTTGAATTTTGAAGGCAATCAGCTACAAGGCTTAATCGTTGATGAGATTTGTGAGATTAAGAGACTTGTTTATCTTTATCTAAGTTTAAACAAGTTTTCTGGAGCAATGCCAACTTGCATAGGAAATATGACTTCTTTGCAAAAGCTTTTTGTGGGCTCCAATAAATTGATTTCAGTTATACCTTCTTCCTTTTGGAACTTAAATGATATATTGGAAGTAAATTTATCTTCCAATATTTTAGTTGGAAATCTTTCATTCAAAATTGGAAACTTAAAAGCTCTTACGTTATTGGATTTGTCAAGAAATAATCTTTCAAGCATCATTCCTATAACATTGGGTGGCTTGCAGAATCTACAAATTCTCTCCTTAGCACATAACACATTGCAAGGGAATATTCCTGAAACATTTGGAAATTTGCTAAGCTTGGTAAAGTTGGACCTCTCCCAAAATAATTTGTCTGGTGAAATCCCTAAATCTCTAGAGTCACTTGTTTATCTTAAGAACATCAATCTCTCTTATAATAAATTGCATGGAGAGATTCCAAATGGTGGGGCTTTTAAAAATTTAACTTTTGAGTCTTTCATGATGAATGACGCTCTTTGTGGCCAACCACGGTTGAGAGTGCCTCCATGTAGAAATGGAATAAGAAAAGGATCAATGACTAAATTGATCTTATTAAAAATTATATTACCCATTGTTGTGTCAACAATTTTAGTTGTTTTAGGTATCATACTATGGTGGAAACGACCAAATTCAAAAAATGATCAAGTTGAAAGGAATTGTTCAACTTTAGGAGTACCAAGAAGGATTTCTTATTTTGAGATTGTAGATGCAACTAATGGATTTGATGAGAGTAACTTGATTGGCCGCGGTAGCTATGGTTCTGTGTTCAAAGGAAAGCTTTTCAATGGGATTGTAGTTGCAATTAAAATCTTCAATTTTGATTCAGAAATAATGTCAAGGAGCTTTGAAGTAGAATGTGATACAATGCGTAATGTGCGCCATCGCAATTTGGTGAAGATCATTAGTAGTTGCTCTAATATTGATTTCAAGTGTTTGATAATGGAGTTCATGCCCAAAGGGAGCCTTGAAAAATGGTTATATTCTCATAACTATTGTTTAGACTTTCTTGAAAGATTGAATATAATGATAAACGTAGCATCTGCCTTAGAGTATCTTCATCATGGCTTGTCAACACCAATAGTTCATTGTGATTTAAAGCCAAGTAACATCTTGTTGGATGATAATATGGTTGGTCATGTGAGTGACTTTGGAATTTCCAAACTTTTAGATGAAGGGCAATCAAAGACACATACAGAAACAATTCCTACAATTGGCTATGTCGCACCTGAATATGGATCTTCTGGAGTTGTTTCAACTAAAGTAGATGTATATAGCTATGGAATTATATTGAAAGAAGTCTTCACAAGGAAAAAACCAACCGACAATATGTTTGTTTCAGGATTGAGCTTAAAGGGTTGGGTAAGTGTGTCAATGCCACATGCAATAATTCAAGTCATAGACTCCAATTTATTACAAGAAGATGAACAACATGTTGATCATATCTTACAAGCCACATCCTCTATTTTTGAATTAGCCTTGAGTTGTTGTACTGATATTCCAGAAACACGTAGCAATATGATAGATGTTGTAGTGTCATTAAACAAGATCAAGGCCAAATTTATGCAAGGTCAGAAATGTCATATTTGA 3558 0.3533 MTNLCFHFCVSMSLLLLCLMVCPIICNTTFTTDDSAVLALKFSVTDPHNHLANWSNSSSICDWTGVICDSNDGRVKILKLGGMGLKGALPSQIGNLSFLEELDLHSNSFYGELPKELRKLDKLRILNLSYNQFSGDIPLWIGSLFTLQHLILEKNNLGGVIPLSISNLSKLETLNWRSNFIEGSIPLEIGRLQYLKILRISSNNLSGMIPPSVFNLSSLEQIILSNNSLSGVIPKGISNLTNVKYISLSGNLLSGQLPKGIENLTMLEELYLSYNDLQGSIPKEIGELHNLKTISLGVNEFFGQIPSTIFNISGLQQMDLSQNNLSGSIPSYICHGIPKIQYLSLEFNELSGALPSQWIQCKDLNMFSVASNRFSGHIPREIVNLTMLQELYLPGNVFTGTIPVEIGNLHKLEKLELAMNELSGSIPSIIFNMSTLKLLSLQSNFLSGSLPSNFGSGLPYLEQLYLWGNRLSGRIPKTISNASKLTMMELAYNNFEGALPSTIGHLIYLKTLQLSANDLTIVETSSSENNFLTSLTNCRNLEVLDLSINPLYTKLSKAIGNFSHSLQKMDMHSCKINGNIPSEIGNLTNLIRLSLGENSLTGPLPRTISNLKALQFLNFEGNQLQGLIVDEICEIKRLVYLYLSLNKFSGAMPTCIGNMTSLQKLFVGSNKLISVIPSSFWNLNDILEVNLSSNILVGNLSFKIGNLKALTLLDLSRNNLSSIIPITLGGLQNLQILSLAHNTLQGNIPETFGNLLSLVKLDLSQNNLSGEIPKSLESLVYLKNINLSYNKLHGEIPNGGAFKNLTFESFMMNDALCGQPRLRVPPCRNGIRKGSMTKLILLKIILPIVVSTILVVLGIILWWKRPNSKNDQVERNCSTLGVPRRISYFEIVDATNGFDESNLIGRGSYGSVFKGKLFNGIVVAIKIFNFDSEIMSRSFEVECDTMRNVRHRNLVKIISSCSNIDFKCLIMEFMPKGSLEKWLYSHNYCLDFLERLNIMINVASALEYLHHGLSTPIVHCDLKPSNILLDDNMVGHVSDFGISKLLDEGQSKTHTETIPTIGYVAPEYGSSGVVSTKVDVYSYGIILKEVFTRKKPTDNMFVSGLSLKGWVSVSMPHAIIQVIDSNLLQEDEQHVDHILQATSSIFELALSCCTDIPETRSNMIDVVVSLNKIKAKFMQGQKCHI 1185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1854 1185 SMART serkin_6 898 1178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci6g1854 1185 Gene3D Ribonuclease Inhibitor 525 833 IPR032675 -
Prci6g1854 1185 SUPERFAMILY Protein kinase-like (PK-like) 877 1170 IPR011009 -
Prci6g1854 1185 ProSitePatterns Protein kinases ATP-binding region signature. 904 926 IPR017441 GO:0005524
Prci6g1854 1185 Gene3D Transferase(Phosphotransferase) domain 1 974 1183 - -
Prci6g1854 1185 SUPERFAMILY L domain-like 372 576 - -
Prci6g1854 1185 SUPERFAMILY L domain-like 564 820 - -
Prci6g1854 1185 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 30 189 - -
Prci6g1854 1185 ProSiteProfiles Protein kinase domain profile. 898 1178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci6g1854 1185 FunFam Serine-threonine protein kinase plant-type 879 973 - -
Prci6g1854 1185 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 534 830 - -
Prci6g1854 1185 SUPERFAMILY RNI-like 78 399 - -
Prci6g1854 1185 Pfam Protein kinase domain 899 1164 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci6g1854 1185 SMART LRR_typ_2 731 754 IPR003591 -
Prci6g1854 1185 SMART LRR_typ_2 409 433 IPR003591 -
Prci6g1854 1185 SMART LRR_typ_2 506 529 IPR003591 -
Prci6g1854 1185 SMART LRR_typ_2 312 336 IPR003591 -
Prci6g1854 1185 SMART LRR_typ_2 120 144 IPR003591 -
Prci6g1854 1185 SMART LRR_typ_2 659 682 IPR003591 -
Prci6g1854 1185 SMART LRR_typ_2 707 730 IPR003591 -
Prci6g1854 1185 SMART LRR_typ_2 96 119 IPR003591 -
Prci6g1854 1185 SMART LRR_typ_2 216 240 IPR003591 -
Prci6g1854 1185 SMART LRR_typ_2 587 611 IPR003591 -
Prci6g1854 1185 SMART LRR_typ_2 458 482 IPR003591 -
Prci6g1854 1185 SMART LRR_typ_2 264 288 IPR003591 -
Prci6g1854 1185 SMART LRR_typ_2 755 779 IPR003591 -
Prci6g1854 1185 Pfam Leucine rich repeat 218 277 IPR001611 GO:0005515
Prci6g1854 1185 Pfam Leucine rich repeat 733 792 IPR001611 GO:0005515
Prci6g1854 1185 Pfam Leucine rich repeat 637 694 IPR001611 GO:0005515
Prci6g1854 1185 Gene3D Ribonuclease Inhibitor 30 182 IPR032675 -
Prci6g1854 1185 Gene3D Ribonuclease Inhibitor 266 524 IPR032675 -
Prci6g1854 1185 Gene3D Phosphorylase Kinase; domain 1 881 973 - -
Prci6g1854 1185 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 974 1182 - -
Prci6g1854 1185 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
Prci6g1854 1185 Gene3D Ribonuclease Inhibitor 183 259 IPR032675 -
Prci6g1854 1185 SMART LRR_sd22_2 409 435 - -
Prci6g1854 1185 SMART LRR_sd22_2 538 564 - -
Prci6g1854 1185 SMART LRR_sd22_2 707 728 - -
Prci6g1854 1185 SMART LRR_sd22_2 659 685 - -
Prci6g1854 1185 SMART LRR_sd22_2 587 613 - -
Prci6g1854 1185 SMART LRR_sd22_2 240 266 - -
Prci6g1854 1185 SMART LRR_sd22_2 288 314 - -
Prci6g1854 1185 SMART LRR_sd22_2 731 750 - -
Prci6g1854 1185 SMART LRR_sd22_2 755 781 - -
Prci6g1854 1185 SMART LRR_sd22_2 458 484 - -
Prci6g1854 1185 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1017 1029 IPR008271 GO:0004672|GO:0006468
Prci6g1854 1185 FunFam Leucine-rich repeat receptor protein kinase EMS1 209 304 - -
Prci6g1854 1185 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 459 1172 - -
Prci6g1854 1185 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 305 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1854 Prci-Chr6 16558902 16568234 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1854 631 798 Receptor kinase-like Gene Family AT3G47570 33.143 3.41e-15 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Prci6g1854 Pkinase 4.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1854 - K13420 qsa:O6P43_031966 1182.16