Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1830 ATGAGTGTGCCGGCATTCTCTTCTCCCTTCGCCTCTTCCTCCACTATTCTTCCTCTGCTCATGCGTCGGTCTCTTCTTCCTCTTCCCCTGAGTCACTGTCAATCTGCTCTTCTCCCCGGTCCTCCTACGTCACCGCTGTTCGATTTTGGCCGTGGGAAGCCTCGACCCTCTTTATCTTCTTCGTGCTGCTGTGTTCTATTGGCGAAAGAAGAGAGCTTCTCACATGCCATGCAGCTCGTGACACCTATTGCGATTTCCATGGCGCTGCAAACGGCGGTGCAGCTCGGCGTGTTCGATGTCATTCATGGAGCTGGTCCCGGCACCGAGATGTCCGCTGCCGAGATCGCGTCGGAGCTTTCTTGCAAGAACCCAGAAGCAGCTTCGGCGCTCGATCGACTCCTCCATCTTCTAGCGTCTCACTCTGTTCTCTGCTGTTCCGTTATCCCCGACGAGAATGGAGGGCCGGGATGTTTCAGGCGATTGTACGGCCTCTCTCCGGTGGCCAAATTCTTTGTGCGAAATACGGACGGTGCATCGTTGGGCCCCGTGGTTGAATTGGCTCATAATAAGGTCTTCCTGGATAGCTGGTCCCAGCTGAAAGATGCAATATTGAACGGGGATATTTCATTCAATGGGGTGCATGGGTCACATGCTTTTGAGTATATGAGGTTGGACTCCAGATTCAACCATGTGTTTAGCAAAGCGATGATGAATCATAGCACTATAGTTATGAACAAGATTCTTGAATCCTACCAAGGTTTTGGTGACATCACTAGACTGGTTGATGTTGGTGGAGGTCTTGGGATTACTCTCAAGTCGATCACATCCAAATATCCAAATATTCAAGGAATCAATTTCGACTTGCCTCATGTCATTCAACACGCACCTCCTTATCCTGGAGTGCAACACGTAGGAGGAAATATGTTTGAAAGCATACCGAGAGGAGATGCCATCTTCATGAAGTGGATACTTCATGATTGGAGCGATGAATGGTGCTTGAAGCTGTTGAAGAATTGCCATGACGCCATTCCTAAAGATGGAAAGGTGATTGTGGTGGAGGCAGTTTTACCATTTGTATCAGAAATTTCTGCTGCAGCGAAAAGCATCACCCAAAGTTATGTGATGATGTTGACTTATTGCCCAGGTGGCAAGGAGAGAACTGAGCATGAGTTCATGAAATTGGCTACATCAGCTGGGTTTAGAGGCATCAGATTTGACTGCTTTGTTCGAAACTTTTGGATTATGGAGTTCTTCAAATAG 1260 0.4825 MSVPAFSSPFASSSTILPLLMRRSLLPLPLSHCQSALLPGPPTSPLFDFGRGKPRPSLSSSCCCVLLAKEESFSHAMQLVTPIAISMALQTAVQLGVFDVIHGAGPGTEMSAAEIASELSCKNPEAASALDRLLHLLASHSVLCCSVIPDENGGPGCFRRLYGLSPVAKFFVRNTDGASLGPVVELAHNKVFLDSWSQLKDAILNGDISFNGVHGSHAFEYMRLDSRFNHVFSKAMMNHSTIVMNKILESYQGFGDITRLVDVGGGLGITLKSITSKYPNIQGINFDLPHVIQHAPPYPGVQHVGGNMFESIPRGDAIFMKWILHDWSDEWCLKLLKNCHDAIPKDGKVIVVEAVLPFVSEISAAAKSITQSYVMMLTYCPGGKERTEHEFMKLATSAGFRGIRFDCFVRNFWIMEFFK 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1830 419 SUPERFAMILY "Winged helix" DNA-binding domain 70 174 IPR036390 -
Prci6g1830 419 PANTHER O-METHYLTRANSFERASE 76 405 IPR016461 GO:0008168
Prci6g1830 419 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 177 417 IPR029063 -
Prci6g1830 419 Pfam O-methyltransferase domain 196 401 IPR001077 GO:0008171
Prci6g1830 419 FunFam Caffeic acid O-methyltransferase 172 419 - -
Prci6g1830 419 Pfam Dimerisation domain 87 138 IPR012967 GO:0046983
Prci6g1830 419 FunFam Caffeic acid 3-O-methyltransferase 60 171 - -
Prci6g1830 419 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 77 419 IPR016461 GO:0008168
Prci6g1830 419 Gene3D - 66 171 IPR036388 -
Prci6g1830 419 Gene3D Vaccinia Virus protein VP39 172 419 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1830 Prci-Chr6 16053249 16068639 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1830 65 419 Monolignol Biosynthesis Gene Families AT5G54160 50.986 1.32e-127 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1830 K13066 - qsa:O6P43_027445 485.337