Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1828 ATGCCCCCTCTAGGGAAAGCACCGACGTCGCCTTCTCTAGTGAAAGCCAGGGAGGGAGACATCAAAGGGCCTTCTATGGAGGGATTGACCGACCGAAGGTCGAGTGATCACAGATGCCCCCTCTTGAGAAGTGGACTATGTTATGAGTCCCATATCGGGAGGCTGCTCGGCGTGTTTGACGTCATTCATAGAGCTGGTCCTGATGCCGAGATGTCCGCCAACGAGATCGCGTTGGAGCTTTCTTGCAAGAACCCAGGAGCAGCTTCCGCGCTGGGTCGACTCCTCCATCTTCTAGCGTCTCACTCTGTTCTTTGTTGTTCCGTTATCGGCGATGAGAATCGAGGGTCGGGATGTTTCAGGCGGTTGTACAGCCTCTCTCCGGTGGCCAAATTCTTCGTTCGAAATGCGGATGATGCATCGTTAGTTCCCTTTATTGAAGTGGCTCATGATAAGGTCTTCCTGGATAGCTGGTTTGTCAGGTCCCAACTGAAAGATGCTACATTGGAGGGGGGTATTTCATTCAATAGGGTCCATGGATCACATGTTTTTGAGTATCTGAGATTGGACTCCAGAGTCAACCATATGTTTCACAAAGCAATGATGAATCATAGCACTATAGTTATGAACAAGATTCTTGGATCCTACCAAGGTTTTGGGGACATCACTAGACTCATTGATGTTGGTGGAGGTCTTGGGATTACTCTCAAGTTGATCACATCAAAATATCCAAACATTCAAGGAATCAATTTCGACTTGCCTCATGTCATTCAACATACGCCTTCTTATCCTGGAGTGGAACACGTAGGAGGAGATACGTTTGAAAGTGTGCCGAGAGGAGATGCCATCTTCATGAAGTGGATACTTCATGATTGGAGCGATGAATGGTGCTTGAAGCTGTTGAAGAATTGCCATGACGTCATTCCTAAAGATGGAAAGGTGATTGCCCAAAGTGATGTGGTGATGTTGACTTGTAGCCAAGGTGGCAAGGAGAGAACAGAGCGTGAGTTCATGAAATTGGCCACATCCGCTGGGTTTAGAGGCATTAGATTTGACCGCTTTGTTCGAAACTTTTGGATTATGGATTTCTTCAAGTAG 1095 0.4721 MPPLGKAPTSPSLVKAREGDIKGPSMEGLTDRRSSDHRCPLLRSGLCYESHIGRLLGVFDVIHRAGPDAEMSANEIALELSCKNPGAASALGRLLHLLASHSVLCCSVIGDENRGSGCFRRLYSLSPVAKFFVRNADDASLVPFIEVAHDKVFLDSWFVRSQLKDATLEGGISFNRVHGSHVFEYLRLDSRVNHMFHKAMMNHSTIVMNKILGSYQGFGDITRLIDVGGGLGITLKLITSKYPNIQGINFDLPHVIQHTPSYPGVEHVGGDTFESVPRGDAIFMKWILHDWSDEWCLKLLKNCHDVIPKDGKVIAQSDVVMLTCSQGGKERTEREFMKLATSAGFRGIRFDRFVRNFWIMDFFK 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1828 364 Gene3D Vaccinia Virus protein VP39 133 364 IPR029063 -
Prci6g1828 364 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 38 364 IPR016461 GO:0008168
Prci6g1828 364 CDD AdoMet_MTases 223 316 - -
Prci6g1828 364 Pfam Dimerisation domain 56 99 IPR012967 GO:0046983
Prci6g1828 364 FunFam Caffeic acid 3-O-methyltransferase 51 132 - -
Prci6g1828 364 PANTHER O-METHYLTRANSFERASE 56 350 IPR016461 GO:0008168
Prci6g1828 364 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 138 359 IPR029063 -
Prci6g1828 364 MobiDBLite consensus disorder prediction 1 36 - -
Prci6g1828 364 PIRSF O-mtase 51 364 IPR016461 GO:0008168
Prci6g1828 364 SUPERFAMILY "Winged helix" DNA-binding domain 56 135 IPR036390 -
Prci6g1828 364 Gene3D - 54 132 IPR036388 -
Prci6g1828 364 MobiDBLite consensus disorder prediction 20 36 - -
Prci6g1828 364 Pfam O-methyltransferase domain 162 315 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1828 Prci-Chr6 15986864 15992696 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1828 56 357 Monolignol Biosynthesis Gene Families AT5G54160 49.387 9.33e-104 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1828 K13066 - cave:132187356 397.897