LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci6g1828	ATGCCCCCTCTAGGGAAAGCACCGACGTCGCCTTCTCTAGTGAAAGCCAGGGAGGGAGACATCAAAGGGCCTTCTATGGAGGGATTGACCGACCGAAGGTCGAGTGATCACAGATGCCCCCTCTTGAGAAGTGGACTATGTTATGAGTCCCATATCGGGAGGCTGCTCGGCGTGTTTGACGTCATTCATAGAGCTGGTCCTGATGCCGAGATGTCCGCCAACGAGATCGCGTTGGAGCTTTCTTGCAAGAACCCAGGAGCAGCTTCCGCGCTGGGTCGACTCCTCCATCTTCTAGCGTCTCACTCTGTTCTTTGTTGTTCCGTTATCGGCGATGAGAATCGAGGGTCGGGATGTTTCAGGCGGTTGTACAGCCTCTCTCCGGTGGCCAAATTCTTCGTTCGAAATGCGGATGATGCATCGTTAGTTCCCTTTATTGAAGTGGCTCATGATAAGGTCTTCCTGGATAGCTGGTTTGTCAGGTCCCAACTGAAAGATGCTACATTGGAGGGGGGTATTTCATTCAATAGGGTCCATGGATCACATGTTTTTGAGTATCTGAGATTGGACTCCAGAGTCAACCATATGTTTCACAAAGCAATGATGAATCATAGCACTATAGTTATGAACAAGATTCTTGGATCCTACCAAGGTTTTGGGGACATCACTAGACTCATTGATGTTGGTGGAGGTCTTGGGATTACTCTCAAGTTGATCACATCAAAATATCCAAACATTCAAGGAATCAATTTCGACTTGCCTCATGTCATTCAACATACGCCTTCTTATCCTGGAGTGGAACACGTAGGAGGAGATACGTTTGAAAGTGTGCCGAGAGGAGATGCCATCTTCATGAAGTGGATACTTCATGATTGGAGCGATGAATGGTGCTTGAAGCTGTTGAAGAATTGCCATGACGTCATTCCTAAAGATGGAAAGGTGATTGCCCAAAGTGATGTGGTGATGTTGACTTGTAGCCAAGGTGGCAAGGAGAGAACAGAGCGTGAGTTCATGAAATTGGCCACATCCGCTGGGTTTAGAGGCATTAGATTTGACCGCTTTGTTCGAAACTTTTGGATTATGGATTTCTTCAAGTAG	1095	0.4721	MPPLGKAPTSPSLVKAREGDIKGPSMEGLTDRRSSDHRCPLLRSGLCYESHIGRLLGVFDVIHRAGPDAEMSANEIALELSCKNPGAASALGRLLHLLASHSVLCCSVIGDENRGSGCFRRLYSLSPVAKFFVRNADDASLVPFIEVAHDKVFLDSWFVRSQLKDATLEGGISFNRVHGSHVFEYLRLDSRVNHMFHKAMMNHSTIVMNKILGSYQGFGDITRLIDVGGGLGITLKLITSKYPNIQGINFDLPHVIQHTPSYPGVEHVGGDTFESVPRGDAIFMKWILHDWSDEWCLKLLKNCHDVIPKDGKVIAQSDVVMLTCSQGGKERTEREFMKLATSAGFRGIRFDRFVRNFWIMDFFK	364

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci6g1828	364	Gene3D	Vaccinia Virus protein VP39	133	364	IPR029063	-
	Prci6g1828	364	ProSiteProfiles	SAM-dependent O-methyltransferase class II-type profile.	38	364	IPR016461	GO:0008168
	Prci6g1828	364	CDD	AdoMet_MTases	223	316	-	-
	Prci6g1828	364	Pfam	Dimerisation domain	56	99	IPR012967	GO:0046983
	Prci6g1828	364	FunFam	Caffeic acid 3-O-methyltransferase	51	132	-	-
	Prci6g1828	364	PANTHER	O-METHYLTRANSFERASE	56	350	IPR016461	GO:0008168
	Prci6g1828	364	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	138	359	IPR029063	-
	Prci6g1828	364	MobiDBLite	consensus disorder prediction	1	36	-	-
	Prci6g1828	364	PIRSF	O-mtase	51	364	IPR016461	GO:0008168
	Prci6g1828	364	SUPERFAMILY	"Winged helix" DNA-binding domain	56	135	IPR036390	-
	Prci6g1828	364	Gene3D	-	54	132	IPR036388	-
	Prci6g1828	364	MobiDBLite	consensus disorder prediction	20	36	-	-
	Prci6g1828	364	Pfam	O-methyltransferase domain	162	315	IPR001077	GO:0008171

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci6g1828	Prci-Chr6	15986864	15992696	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci6g1828	56	357	Monolignol Biosynthesis Gene Families	AT5G54160	49.387	9.33e-104	308