Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1823 ATGGCAAACTTTTGTCTTCAGTATTTCTCCTTCTTCCTCTTTTCACTGCTTTGTCTCATGGCTTGTCTCACTTTATCTCACACCAATTTTACCATGAATGATGAAATGACACTTCTTGCTTTCAAGTTTTCCATCAAAGACCCTTACAATCACTTGGCTAATTGGTCCAACTCTTCTTCCATTTGTAATTGGGTTGGAGTTACATGTGATGCTCATAACAGAGTAAGAATCTTGAATCTTGCTGAGATGGGTCTCAATGGCACCTTACCCTCACAACTTGGGAATCTCTCCTTTTTAGTGGAACTTGACCTTCACAGAAACAACTTTTATGGTCAGTTACCAAAAGAGTTGTTTCAGTTACAGAAGTTGGAAATTCTCAACTTGAGTAATAACACATTAAGTGGAGAAATTTCTTGGATTCCAAGCTTGTTTACCCTTCAACAATTGATTCTTCATCATAATGGTTTTGGAGGTGTTATTCCCACAAGTGTATACAATTTATCAAAGTTAGTGACCCTGGATTGGAGTTTCAACTTTATCCAAGGATCTATTCCACTTGAGATTGGAAAACTTCAACACTTGAGGATTTTAAACATTGCAATGAACAAGCTTTCAGGAAGTATACCTCTAGCTATTTCTAACTTATCCTCACTTGAACAAATAGTTTTATCTCACAACTCTTTATCAGGAGTTATTCCCGAAAAAATTAGCCATCTCACAAAGCTGGAGGTTGTAAAGTTGGCTGCTAATCAACTATCTGGCTACATACCGGAGAATATTGGGAACTTAACTATGCTTCAAGGCATAATTCTTGACCGCAATAACCTACAAGGGACAATACCTATGGAAATAGGCAATCTTCATGAACTTAAGATATTACAACTGGCACAGAACAATTTGAGCGGATCTATTCCATCAAAAATTTTTAACATGTCAGCTTTGAATATCTTGTCCATATCAAACAATTCTATATCTGGTAGACTTCCAGAAGATTTTGGATGTGGTCTTTCTAATCTAGACGAGATATATTTATGGGGCAACAAACTTTCTGGAAGAATCCCGAATACTATATCCAATGCTTCTAAGCTAACCAGAATAGAATTGCAGAAAAACAAATTCACGGGAGTTTTACCAAGCACACTTGGTCATTTAAGATACTTAAAAATCCTTGTAGTATATCACAACAATTTGACCACCGCAGATGCTTCCAATTCTAAGACTAAGACTAGCTTTCTTAGCTCATTGTCAAATTGTAGACAATTGGAAGTCTTGGATCTCTCAATAAATCCATTGTATATAAAACTTCCCAAATCCATTGGAAACTTGTCAAGTTCTTTACAAAGGTTGATCTTACATTATTCTGGTATTCATGGAAACATTCCATCAGAAATAGGGAATCTCACTAATTTGGTGGTAATATCTTTGGATGGAAATGTTTTGAATGGAACAATTCCAAAAACAATTGGTAGCTTACAAGCTCTTCAGTATTTGAGTATTGAATTCAATGAGCTAGTTGGTTTGATCATTGCTGAGCTTTGTCAAATCAAGCAACTTGCCTATTTGCAGCTAAGTGGAAATAAGTTTTTTGGAACAATGCCACATTGCTTAGGAGATCTTACCTCTTTACGATACCTTCATTTAGGCTCCAATAAGTTGAGTTCAATGATACCTTCACCTCTTTGGAATTTAAAAGATATATTGGAAGTCAACTTATCTTCTAATAATTTTGTTGGAAATCTTTCATACAAGATTGGGAATTTAAAAGCTCTCGTGTCATTGGATTTGTCAAGAAATCAAATTTCAGGCATCATTCCAACAACCATGGGTAATTTGCAAAATTTGAAAATTCTCTCCTTAGCTATTAATGAACTGCAAGGGCATATTCCTGAATCATTTGGGAATTTGCTAAGCTTAGAAAGTTTGAACCTCTCTCAAAATTATTTGTCTGGCGAGATCCCTAAATCTCTAGAATCACTTACATATCTTGAGTTTGTCAATCTTTCCTACAACAAACTACAAGGAGAAATTCCAAGTGGAGGAGTTTTCACAAATTTAACTGCTCAATCTCTCATGATGAATGAAGGTCTTTGTGGCCAACCACAATTAGAAGTTCCTCCATGCAAAAAAGGAAGAAAAAAGTCAATGGCAAGGTTGATTTTTTTGAAATGCATATTACCTGTGGTTGTGTCAACAATAATTGTTGTATTAGCCATTACCCTTTTACAACATAAACGACAAAACACAAGGGATGCAATTGAAAGGGATTTATCAACTTTTGGAGTACCAAGAAGGATTTCTTATTTTGAAATCTTGGAAGCAACCAATAGATTTGATGATTGCAACTTACTAGGAAAGGGCGGTTATGGTTCTGTGTACAAAGGAAGGCTGTCAAGTGGGATGATGGTCGCAATTAAAATCTTCAATTCTAATTTAGAACAAATGTTAAGGAGCTTTGAAGTAGAATGTGACATCATGCGTAATTTGCGCCATCGTAACTTAGTCAAGATCATTAGCAGTTGTTGTAATATTAATTTCAGGTCTTTGATTATGGAGTTCATGCCCAATGGGAGTCTTGAAAAATGGTTACATTCTCATACAAATTGTTTAGATTTTCTACAAAGATTGAATATTATGATAAATGTAGCGCATGCTTTGGAGTACCTCCATCATGGCTTGTCAACTCCAGTGGTTCATTGTGATTTAAAGCCAAGTAACATCTTATTGAATGATGATATGGTTGCACATGTAAGTGATTTTGGAATTTCCAAACTTTTAGCTGAAGGGCAATCTATGACATATACAAAGACAATACCTACAATTGGCTATATAGCGCCTGAATATGGATATGGAGGAATTGTTTCAACTAAAGTAGATGTGTATAGTTATGGAATTATATTATTAGAAGTCTTCACAAGAAAAAGGCCAACAGATGATATGTTTGCGCCAGGATTGAACTTGAAGAGTTGGGTAAGTGAGTTAATGTCACATGCAATAGTTCAACTCATGGATTCCAATCTAATAGAAGGAGATGAATGGCATATTGAAAACATTATGACATCTGCTTCCTCAATTTTTGAATTGGCCTTGAAGTGTTGCAATGATTCTCCAGAAACACGTAGCAATATGATAGATGTAGCAACATCTTTAAACAAGGTCAAGGTCAAGTATATGCAAAGGCAGAAAATCATACAAAAATAA 3198 0.3527 MANFCLQYFSFFLFSLLCLMACLTLSHTNFTMNDEMTLLAFKFSIKDPYNHLANWSNSSSICNWVGVTCDAHNRVRILNLAEMGLNGTLPSQLGNLSFLVELDLHRNNFYGQLPKELFQLQKLEILNLSNNTLSGEISWIPSLFTLQQLILHHNGFGGVIPTSVYNLSKLVTLDWSFNFIQGSIPLEIGKLQHLRILNIAMNKLSGSIPLAISNLSSLEQIVLSHNSLSGVIPEKISHLTKLEVVKLAANQLSGYIPENIGNLTMLQGIILDRNNLQGTIPMEIGNLHELKILQLAQNNLSGSIPSKIFNMSALNILSISNNSISGRLPEDFGCGLSNLDEIYLWGNKLSGRIPNTISNASKLTRIELQKNKFTGVLPSTLGHLRYLKILVVYHNNLTTADASNSKTKTSFLSSLSNCRQLEVLDLSINPLYIKLPKSIGNLSSSLQRLILHYSGIHGNIPSEIGNLTNLVVISLDGNVLNGTIPKTIGSLQALQYLSIEFNELVGLIIAELCQIKQLAYLQLSGNKFFGTMPHCLGDLTSLRYLHLGSNKLSSMIPSPLWNLKDILEVNLSSNNFVGNLSYKIGNLKALVSLDLSRNQISGIIPTTMGNLQNLKILSLAINELQGHIPESFGNLLSLESLNLSQNYLSGEIPKSLESLTYLEFVNLSYNKLQGEIPSGGVFTNLTAQSLMMNEGLCGQPQLEVPPCKKGRKKSMARLIFLKCILPVVVSTIIVVLAITLLQHKRQNTRDAIERDLSTFGVPRRISYFEILEATNRFDDCNLLGKGGYGSVYKGRLSSGMMVAIKIFNSNLEQMLRSFEVECDIMRNLRHRNLVKIISSCCNINFRSLIMEFMPNGSLEKWLHSHTNCLDFLQRLNIMINVAHALEYLHHGLSTPVVHCDLKPSNILLNDDMVAHVSDFGISKLLAEGQSMTYTKTIPTIGYIAPEYGYGGIVSTKVDVYSYGIILLEVFTRKRPTDDMFAPGLNLKSWVSELMSHAIVQLMDSNLIEGDEWHIENIMTSASSIFELALKCCNDSPETRSNMIDVATSLNKVKVKYMQRQKIIQK 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1823 1065 SMART LRR_sd22_2 587 613 - -
Prci6g1823 1065 SMART LRR_sd22_2 215 241 - -
Prci6g1823 1065 SMART LRR_sd22_2 336 362 - -
Prci6g1823 1065 SMART LRR_sd22_2 418 444 - -
Prci6g1823 1065 SMART LRR_sd22_2 287 313 - -
Prci6g1823 1065 SMART LRR_sd22_2 539 560 - -
Prci6g1823 1065 SMART LRR_sd22_2 167 188 - -
Prci6g1823 1065 SMART LRR_sd22_2 635 661 - -
Prci6g1823 1065 SUPERFAMILY L domain-like 444 701 - -
Prci6g1823 1065 SUPERFAMILY Protein kinase-like (PK-like) 757 1049 IPR011009 -
Prci6g1823 1065 PANTHER OS04G0122200 PROTEIN 276 1057 - -
Prci6g1823 1065 FunFam Leucine-rich repeat receptor protein kinase EMS1 142 231 - -
Prci6g1823 1065 SMART serkin_6 777 1054 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci6g1823 1065 Gene3D Phosphorylase Kinase; domain 1 760 852 - -
Prci6g1823 1065 ProSiteProfiles Leucine-rich repeat profile. 637 660 IPR001611 GO:0005515
Prci6g1823 1065 Gene3D Ribonuclease Inhibitor 142 231 IPR032675 -
Prci6g1823 1065 Gene3D Ribonuclease Inhibitor 232 332 IPR032675 -
Prci6g1823 1065 Gene3D Ribonuclease Inhibitor 33 141 IPR032675 -
Prci6g1823 1065 CDD STKc_IRAK 783 1051 - -
Prci6g1823 1065 Gene3D Ribonuclease Inhibitor 399 715 IPR032675 -
Prci6g1823 1065 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 853 1062 - -
Prci6g1823 1065 SUPERFAMILY L domain-like 55 399 - -
Prci6g1823 1065 SMART LRR_typ_2 336 360 IPR003591 -
Prci6g1823 1065 SMART LRR_typ_2 467 491 IPR003591 -
Prci6g1823 1065 SMART LRR_typ_2 215 238 IPR003591 -
Prci6g1823 1065 SMART LRR_typ_2 287 311 IPR003591 -
Prci6g1823 1065 SMART LRR_typ_2 635 659 IPR003591 -
Prci6g1823 1065 SMART LRR_typ_2 239 263 IPR003591 -
Prci6g1823 1065 SMART LRR_typ_2 611 634 IPR003591 -
Prci6g1823 1065 SMART LRR_typ_2 539 563 IPR003591 -
Prci6g1823 1065 SMART LRR_typ_2 587 610 IPR003591 -
Prci6g1823 1065 SMART LRR_typ_2 96 120 IPR003591 -
Prci6g1823 1065 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 232 405 - -
Prci6g1823 1065 ProSiteProfiles Protein kinase domain profile. 777 1057 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci6g1823 1065 PRINTS Leucine-rich repeat signature 635 648 - -
Prci6g1823 1065 PRINTS Leucine-rich repeat signature 590 603 - -
Prci6g1823 1065 FunFam Leucine-rich repeat receptor-like kinase 34 141 - -
Prci6g1823 1065 ProSitePatterns Protein kinases ATP-binding region signature. 783 805 IPR017441 GO:0005524
Prci6g1823 1065 Pfam Leucine rich repeat N-terminal domain 34 70 IPR013210 -
Prci6g1823 1065 Pfam Protein kinase domain 780 1043 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci6g1823 1065 Gene3D Transferase(Phosphotransferase) domain 1 853 1064 - -
Prci6g1823 1065 Gene3D Ribonuclease Inhibitor 333 398 IPR032675 -
Prci6g1823 1065 Pfam Leucine rich repeat 193 252 IPR001611 GO:0005515
Prci6g1823 1065 Pfam Leucine rich repeat 613 672 IPR001611 GO:0005515
Prci6g1823 1065 Pfam Leucine rich repeat 289 349 IPR001611 GO:0005515
Prci6g1823 1065 Pfam Leucine rich repeat 517 576 IPR001611 GO:0005515
Prci6g1823 1065 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 414 711 - -
Prci6g1823 1065 ProSitePatterns Serine/Threonine protein kinases active-site signature. 896 908 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1823 Prci-Chr6 15938746 15945616 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1823 564 678 Receptor kinase-like Gene Family AT3G47570 37.410 2.09e-13 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Prci6g1823 Pkinase 4.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1823 - K13420 qsa:O6P43_013069 1011.13