Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1822 ATGGCAAACTTTTGTCTTCAGTATTTCTCCTTCTTCCTCTTTTCACTGCTTTGTCTCATGGCTTGTCTCACTTTATCTCACACCAATTTTACCATGAATGATGAAATGACACTTCTTGCTTTCAAGTTTTCCATCAAAGACCCTTACAATCACTTGGCTAATTGGTCCAACTCTTCTTCCATTTGTAATTGGGTTGGAGTTACATGTGATGCTCATAACAGAGTAAGAATCTTGAATCTTGCTGAGATGGGTCTCAATGGCACCTTACCCTCACAACTTGGGAATCTCTCCTTTTTAGTGGAACTTGACCTTCACAGAAACAACTTTTATGGTCAGTTACCAAAAGAGTTGTTTCAGTTACAGAAGTTGGAAATTCTCAACTTGAGTAATAACACATTAAGTGGAGAAATTTCTTGGATTCCAAGCTTGTTTACCCTTCAACAATTGATTCTTCATCATAATGGTTTTGGAGGTGTTATTCCCACAAGTGTATACAATTTATCAAAGTTAGTGACCCTGGATTGGAGTTTCAACTTTATCCAAGGATCTATTCCACTTGAGATTGGAAAACTTCAACACTTGAGGATTTTAAACATTGCAATGAACAAGCTTTCAGGAAGTATACCTCTAGCTATTTCTAACTTATCCTCACTTGAACAAATAGTTTTATCTCACAACTCTTTATCAGGAGTTATTCCCGAAAAAATTAGCCATCTCACAAAGCTGGAGGTTGTAAAGTTGGCTGCTAATCAACTATCTGGCTACATACCGGAGAATATTGGGAACTTAACTATGCTTCAAGGCATAATTCTTGACCGCAATAACCTACAAGATTGGAATCGATGTAAGGAGCTCAAAATCTTGTCGTCATCTTTCACCACATTGAGTGGACACATACCAAGTGAGATCGGAAACTTAACAAAGCTTCAAGAATTATATTTAGTAGCCAACTTTTTCACAGGGACAATACCTATGGAAATAGGCAATCTTCATGAACTTAAGATATTACAACTGGCACAGAACAATTTGAGCGGATCTATTCCATCAAAAATTTTTAACATGTCAGCTTTGAATATCTTGTCCATATCAAACAATTCTATATCTGGTAGACTTCCAGAAGATTTTGGATGTGGTCTTTCTAATCTAGACGAGATATATTTATGGGGCAACAAACTTTCTGGAAGAATCCCGAATACTATATCCAATGCTTCTAAGCTAACCAGAATAGAATTGCAGAAAAACAAATTCACGGGAGTTTTACCAAGCACACTTGGTCATTTAAGATACTTAAAAATCCTTGTAGTATATCACAACAATTTGACCACCGCAGATGCTTCCAATTCTAAGACTAAGACTAGCTTTCTTAGCTCATTGTCAAATTGTAGACAATTGGAAGTCTTGGATCTCTCAATAAATCCATTGTATATAAAACTTCCCAAATCCATTGGAAACTTGTCAAGTTCTTTACAAAGGTTGATCTTACATTATTCTGGTATTCATGGAAACATTCCATCAGAAATAGGGAATCTCACTAATTTGGTGGTAATATCTTTGGATGGAAATGTTTTGAATGGAACAATTCCAAAAACAATTGGTAGCTTACAAGCTCTTCAGTATTTGAGTATTGAATTCAATGAGCTAGTTGGTTTGATCATTGCTGAGCTTTGTCAAATCAAGCAACTTGCCTATTTGCAGCTAAGTGGAAATAAGTTTTTTGGAACAATGCCACATTGCTTAGGAGATCTTACCTCTTTACGATACCTTCATTTAGGCTCCAATAAGTTGAGTTCAATGATACCTTCACCTCTTTGGAATTTAAAAGATATATTGGAAGTCAACTTATCTTCTAATAATTTTGTTGGAAATCTTTCATACAAGATTGGGAATTTAAAAGCTCTCGTGTCATTGGATTTGTCAAGAAATCAAATTTCAGGCATCATTCCAACAACCATGGGTAATTTGCAAAATTTGAAAATTCTCTCCTTAGCTATTAATGAACTGCAAGGGCATATTCCTGAATCATTTGGGAATTTGCTAAGCTTAGAAAGTTTGAACCTCTCTCAAAATTATTTGTCTGGCGAGATCCCTAAATCTCTAGAATCACTTACATATCTTGAGTTTGTCAATCTTTCCTACAACAAACTACAAGGAGAAATTCCAAGTGGAGGAGTTTTCACAAATTTAACTGCTCAATCTCTCATGATGAATGAAGGTCTTTGTGGCCAACCACAATTAGAAGTTCCTCCATGCAAAAAAGGAAGAAAAAAGTCAATGGCAAGGTTGATTTTTTTGAAATGCATATTACCTGTGGTTGTGTCAACAATAATTGTTGTATTAGCCATTACCCTTTTACAACATAAACGACAAAACACAAGGGATGCAATTGAAAGGGATTTATCAACTTTTGGAGTACCAAGAAGGATTTCTTATTTTGAAATCTTGGAAGCAACCAATAGATTTGATGATTGCAACTTACTAGGAAAGGGCGGTTATGGTTCTGTGTACAAAGGAAGGCTGTCAAGTGGGATGATGGTCGCAATTAAAATCTTCAATTCTAATTTAGAACAAATGTTAAGGAGCTTTGAAGTAGAATGTGACATCATGCGTAATTTGCGCCATCGTAACTTAGTCAAGATCATTAGCAGTTGTTGTAATATTAATTTCAGGTCTTTGATTATGGAGTTCATGCCCAATGGGAGTCTTGAAAAATGGTTACATTCTCATACAAATTGTTTAGATTTTCTACAAAGATTGAATATTATGATAAATGTAGCGCATGCTTTGGAGTACCTCCATCATGGCTTGTCAACTCCAGTGGTTCATTGTGATTTAAAGCCAAGTAACATCTTATTGAATGATGATATGGTTGCACATGTAAGTGATTTTGGAATTTCCAAACTTTTAGCTGAAGGGCAATCTATGACATATACAAAGACAATACCTACAATTGGCTATATAGCGCCTGAATATGGATATGGAGGAATTGTTTCAACTAAAGTAGATGTGTATAGTTATGGAATTATATTATTAGAAGTCTTCACAAGAAAAAGGCCAACAGATGATATGTTTGCGCCAGGATTGAACTTGAAGAGTTGGGTAAGTGAGTTAATGTCACATGCAATAGTTCAACTCATGGATTCCAATCTAATAGAAGGAGATGAATGGCATATTGAAAACATTATGACATCTGCTTCCTCAATTTTTGAATTGGCCTTGAAGTGTTGCAATGATTCTCCAGAAACACGTAGCAATATGATAGATGTAGCAACATCTTTAAACAAGGTCAAGGTCAAGTATATGCAAAGGCAGAAAATCATACAAAAATAA 3327 0.3535 MANFCLQYFSFFLFSLLCLMACLTLSHTNFTMNDEMTLLAFKFSIKDPYNHLANWSNSSSICNWVGVTCDAHNRVRILNLAEMGLNGTLPSQLGNLSFLVELDLHRNNFYGQLPKELFQLQKLEILNLSNNTLSGEISWIPSLFTLQQLILHHNGFGGVIPTSVYNLSKLVTLDWSFNFIQGSIPLEIGKLQHLRILNIAMNKLSGSIPLAISNLSSLEQIVLSHNSLSGVIPEKISHLTKLEVVKLAANQLSGYIPENIGNLTMLQGIILDRNNLQDWNRCKELKILSSSFTTLSGHIPSEIGNLTKLQELYLVANFFTGTIPMEIGNLHELKILQLAQNNLSGSIPSKIFNMSALNILSISNNSISGRLPEDFGCGLSNLDEIYLWGNKLSGRIPNTISNASKLTRIELQKNKFTGVLPSTLGHLRYLKILVVYHNNLTTADASNSKTKTSFLSSLSNCRQLEVLDLSINPLYIKLPKSIGNLSSSLQRLILHYSGIHGNIPSEIGNLTNLVVISLDGNVLNGTIPKTIGSLQALQYLSIEFNELVGLIIAELCQIKQLAYLQLSGNKFFGTMPHCLGDLTSLRYLHLGSNKLSSMIPSPLWNLKDILEVNLSSNNFVGNLSYKIGNLKALVSLDLSRNQISGIIPTTMGNLQNLKILSLAINELQGHIPESFGNLLSLESLNLSQNYLSGEIPKSLESLTYLEFVNLSYNKLQGEIPSGGVFTNLTAQSLMMNEGLCGQPQLEVPPCKKGRKKSMARLIFLKCILPVVVSTIIVVLAITLLQHKRQNTRDAIERDLSTFGVPRRISYFEILEATNRFDDCNLLGKGGYGSVYKGRLSSGMMVAIKIFNSNLEQMLRSFEVECDIMRNLRHRNLVKIISSCCNINFRSLIMEFMPNGSLEKWLHSHTNCLDFLQRLNIMINVAHALEYLHHGLSTPVVHCDLKPSNILLNDDMVAHVSDFGISKLLAEGQSMTYTKTIPTIGYIAPEYGYGGIVSTKVDVYSYGIILLEVFTRKRPTDDMFAPGLNLKSWVSELMSHAIVQLMDSNLIEGDEWHIENIMTSASSIFELALKCCNDSPETRSNMIDVATSLNKVKVKYMQRQKIIQK 1108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1822 1108 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 279 447 - -
Prci6g1822 1108 ProSiteProfiles Leucine-rich repeat profile. 680 703 IPR001611 GO:0005515
Prci6g1822 1108 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 457 754 - -
Prci6g1822 1108 SUPERFAMILY RNI-like 282 531 - -
Prci6g1822 1108 SUPERFAMILY Protein kinase-like (PK-like) 800 1092 IPR011009 -
Prci6g1822 1108 Gene3D Ribonuclease Inhibitor 31 182 IPR032675 -
Prci6g1822 1108 Gene3D Ribonuclease Inhibitor 183 279 IPR032675 -
Prci6g1822 1108 Pfam Protein kinase domain 823 1086 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci6g1822 1108 SMART serkin_6 820 1097 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci6g1822 1108 FunFam Leucine-rich repeat receptor-like protein kinase 31 185 - -
Prci6g1822 1108 SUPERFAMILY L domain-like 33 279 - -
Prci6g1822 1108 Gene3D Transferase(Phosphotransferase) domain 1 896 1107 - -
Prci6g1822 1108 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 379 1089 - -
Prci6g1822 1108 CDD STKc_IRAK 826 1094 - -
Prci6g1822 1108 SMART LRR_typ_2 510 534 IPR003591 -
Prci6g1822 1108 SMART LRR_typ_2 630 653 IPR003591 -
Prci6g1822 1108 SMART LRR_typ_2 330 354 IPR003591 -
Prci6g1822 1108 SMART LRR_typ_2 678 702 IPR003591 -
Prci6g1822 1108 SMART LRR_typ_2 215 238 IPR003591 -
Prci6g1822 1108 SMART LRR_typ_2 582 606 IPR003591 -
Prci6g1822 1108 SMART LRR_typ_2 239 263 IPR003591 -
Prci6g1822 1108 SMART LRR_typ_2 654 677 IPR003591 -
Prci6g1822 1108 SMART LRR_typ_2 379 403 IPR003591 -
Prci6g1822 1108 SMART LRR_typ_2 96 120 IPR003591 -
Prci6g1822 1108 Pfam Leucine rich repeat N-terminal domain 34 70 IPR013210 -
Prci6g1822 1108 FunFam Leucine-rich repeat receptor protein kinase EMS1 186 278 - -
Prci6g1822 1108 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 896 1105 - -
Prci6g1822 1108 ProSiteProfiles Protein kinase domain profile. 820 1100 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci6g1822 1108 SUPERFAMILY L domain-like 487 744 - -
Prci6g1822 1108 ProSitePatterns Serine/Threonine protein kinases active-site signature. 939 951 IPR008271 GO:0004672|GO:0006468
Prci6g1822 1108 Gene3D Ribonuclease Inhibitor 442 758 IPR032675 -
Prci6g1822 1108 Gene3D Ribonuclease Inhibitor 280 441 IPR032675 -
Prci6g1822 1108 Gene3D Phosphorylase Kinase; domain 1 803 895 - -
Prci6g1822 1108 PRINTS Leucine-rich repeat signature 633 646 - -
Prci6g1822 1108 PRINTS Leucine-rich repeat signature 678 691 - -
Prci6g1822 1108 Pfam Leucine rich repeat 560 619 IPR001611 GO:0005515
Prci6g1822 1108 Pfam Leucine rich repeat 217 276 IPR001611 GO:0005515
Prci6g1822 1108 Pfam Leucine rich repeat 332 392 IPR001611 GO:0005515
Prci6g1822 1108 Pfam Leucine rich repeat 656 715 IPR001611 GO:0005515
Prci6g1822 1108 SMART LRR_sd22_2 215 241 - -
Prci6g1822 1108 SMART LRR_sd22_2 678 704 - -
Prci6g1822 1108 SMART LRR_sd22_2 630 656 - -
Prci6g1822 1108 SMART LRR_sd22_2 582 603 - -
Prci6g1822 1108 SMART LRR_sd22_2 379 405 - -
Prci6g1822 1108 SMART LRR_sd22_2 330 356 - -
Prci6g1822 1108 SMART LRR_sd22_2 461 487 - -
Prci6g1822 1108 SMART LRR_sd22_2 167 188 - -
Prci6g1822 1108 ProSitePatterns Protein kinases ATP-binding region signature. 826 848 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1822 Prci-Chr6 15938746 15945616 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1822 607 721 Receptor kinase-like Gene Family AT3G47570 37.410 2.17e-13 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Prci6g1822 Pkinase 5.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1822 - K13420 qsa:O6P43_031956 1125.15