Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1728 ATGGGGAGGGGGAAGATAGAGATAAAGAGGATAGAGAACACAACGAATCGGCAAGTGACATTCTGCAAAAGAAGGAATGGGCTTTTGAAGAAAGCTTATGAGCTTTCTGTTCTCTGTGATGCTGAAGTTTCTCTCATCGTCTTCTCTAGTCGTGGTCGTCTTTATGAGTACTCCAACAACAACATAAGGTCAACTATAGAGAGGTATAAAAAGGCATGTTCAGATCATTCAAGTACCAGCTCTACTACCGAAATCAATGCCCAGTATTATCAACAAGAATCTGCAAAGCTACGACAGCAGATTCAAATGCTGCAAAGTTCTAACAGGCACTTGATGGGTGATGCCTTGAGCACGCTGAATGTGAAGGAGCTGAAGCAGCTGGAGAATAGACTTGAACGAGCACTCTCTAGAATCAGGTCCAAAAAGCATGAGATGCTGCTGATGGAAATCGAATACTTGCAGAAGAAGGAGATTGAACTTGAAAATGAAAACCTCTGTATTCGGACTAAGATAGCAGAAGAGGAGAGGGCACAAGAAGCACACATGGTATCAGAAAGGCAAGAGCTGAGTGCCATTGAGGCATTAGCTTCTCGCAATTACTTCATTAATAATGCTAATAATGATCCATCATCTACCTACCTTTCTCTTTCTGACAAGAAGAATCTTCGTTTTGAGTCAGCTTTTTGGTTGTACCATGAATATTCTGTTTAA 711 0.4135 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNNIRSTIERYKKACSDHSSTSSTTEINAQYYQQESAKLRQQIQMLQSSNRHLMGDALSTLNVKELKQLENRLERALSRIRSKKHEMLLMEIEYLQKKEIELENENLCIRTKIAEEERAQEAHMVSERQELSAIEALASRNYFINNANNDPSSTYLSLSDKKNLRFESAFWLYHEYSV 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1728 236 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Prci6g1728 236 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci6g1728 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci6g1728 236 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci6g1728 236 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Prci6g1728 236 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Prci6g1728 236 FunFam agamous-like MADS-box protein AGL11 13 96 - -
Prci6g1728 236 Coils Coil 121 144 - -
Prci6g1728 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci6g1728 236 Coils Coil 155 175 - -
Prci6g1728 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci6g1728 236 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci6g1728 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci6g1728 236 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci6g1728 236 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci6g1728 236 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1728 Prci-Chr6 14524805 14536496 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1728 1 201 MADS-box Gene Family AT4G09960 79.310 6.68e-113 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci6g1728 K-box 4.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1728 K09264 - gmx:100301905 348.206