Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1677 ATGTCTACAACAGTTCTTGATGGCCAGTCTGATGAAAAATTGGTTAGGAAGCCATCTGTTATTCGGGACTACCCACCTGGGATTGGACGGAGTACAGCAAGAATCCATCCAAGGGCAATGTTTTCAAGAAGGTTTCCTTCCTCAAGAGTTTCCGCTATCAGAGATTACCCCCCTCTTTGTGGACCAAATTCCCTGAGTCAGGGTAAGGGAAATGTTTCCAAGGGCAAGCTCATGGACAGGAATTTGAGTGGTGGTATGGAAGAAAGGAAGAGAAAACTCGATTGCCTCACACCGGGTGATGGGTCTAAAGCTGTGTTGAGGACTAAAGACTCTTTGAATCATTCAAAGATGAATATTTTGAAAAAGAGAGAAGGAAATGCTGCTTCTGGAGGTATAGGTAGAAAATTTTCTGATGTCCGCAGATCACATGGTTATATTGTAAATGTTCCACTTCTGCGTCGCGGTACCCGAAATACTGTAAGGGAGACGATGCGCTGGTTTCAAGCTGTTTGTAGAAAATTGTTGCAAGAAGAAGAAGCGAAGTTAAACAGCCAAGCAAAAGCTCACAGGAGGATTGATTTAGAGGCTTTTAAGATACTTAAAAAGGAAGGAAAATGTGTAAATGTTGGAAAGATCTTTGGTTCTGTCCCAGGGGTTGAAGTAGGTGATGAATTTGACTATAGGATTGAGCTTAATATAGTTGGTCTTCATCACCCATCACAAGCTGGCATAGATTATACGACAATCAACGGTGAGCACCTTGCAACTAGTATTGTTTCATCCGGGGGATACAATGATGAGTTGGATAATTCAGGTGTCTTGACTTATTCAGGCCATGGGGGGAATGTGATGTGCAGCAAGAAAAAACCTGAAGACCAGAAGCTTGAGCGGGGTAATCTTGCTCTGAAAAACAGTATTAAGAAAAAGAATCCTGTTAGAGTGATACGTGGTGCTTTCTTCGGAGATGGAAGTCGTAAGAGATATGTGTATGATGGATTGTATGAAGTTGAGACATATTGGCAAGAAAAGGGGCCGCATGGCAAGATGATTTTCAGGTTTCAGCTGCAAAGAATCCCAAATCAACCAGAGCTTCCTTGGATTGAACTGAAGAATTCCAAAATGTTCACATTAAGGAAGGGTTTGATTGTTGCTGACATCTCACATGGTAAAGAGGAATTACCTATTCGTGCTGTGAATACCATAGATAATGAAAAACCACCATCATTTGATTATGTTACTAGGATGATCTATCCTGATTGGTTGCATCCAATAACTGCTGAGGGATGTAACTGTACTGACAGATGCTCTGACCCAACAAGATGTTCTTGTGCGGTTAAAAATGGAGGAATTCCATTCAATCACACGGGGTGTATTGTAGAAGTAAAGCCACTAGTCTACGAGTGTGGCCCTTCTTGCAAATGCCCTCCAGATTGCTATAACAGGGTCAGCCAACGTGGCATAAGATTCCCACTTGAAATTTATAAAACTGACAAAAGGGGATGGGGAGTTAGAGCTTATTGCTCCATACCTTCGGGGAGTTTTGTATGTGAATACATTGGAGAGTTGCTTGAAGACAAGGAAGCTGAACAAAGAACTGGCCATGATGAGTATCTGTTTGATATTGGTAATAACTTGATCAACAATAGTATTCTTTCTAATGAATCTAGGCCTGAAGGCTCCGACAATGGTGGTGGCTTCACCATCGATGCAGCTCGATATGGTAATGTTGGCAGGTTTTTCAACCATAGCTGTGCCCCTAATATGTATGCACAGAATGTCCTGTATGATCACGGTGACTGCAGGATTCCTCACATCATGCTGTTTGCCGCTGAGAACATTCCTCCATTGAAAGAGCTTACCTATGATTACAACTACTCAAAGGATCAAATCTATGATTCTGATGGCAACATAAAGAAGAAGGATTGCTTTTGTGGCTCTGTGGGATGTACAGGGAGGATGTATTGA 1965 0.4204 MSTTVLDGQSDEKLVRKPSVIRDYPPGIGRSTARIHPRAMFSRRFPSSRVSAIRDYPPLCGPNSLSQGKGNVSKGKLMDRNLSGGMEERKRKLDCLTPGDGSKAVLRTKDSLNHSKMNILKKREGNAASGGIGRKFSDVRRSHGYIVNVPLLRRGTRNTVRETMRWFQAVCRKLLQEEEAKLNSQAKAHRRIDLEAFKILKKEGKCVNVGKIFGSVPGVEVGDEFDYRIELNIVGLHHPSQAGIDYTTINGEHLATSIVSSGGYNDELDNSGVLTYSGHGGNVMCSKKKPEDQKLERGNLALKNSIKKKNPVRVIRGAFFGDGSRKRYVYDGLYEVETYWQEKGPHGKMIFRFQLQRIPNQPELPWIELKNSKMFTLRKGLIVADISHGKEELPIRAVNTIDNEKPPSFDYVTRMIYPDWLHPITAEGCNCTDRCSDPTRCSCAVKNGGIPFNHTGCIVEVKPLVYECGPSCKCPPDCYNRVSQRGIRFPLEIYKTDKRGWGVRAYCSIPSGSFVCEYIGELLEDKEAEQRTGHDEYLFDIGNNLINNSILSNESRPEGSDNGGGFTIDAARYGNVGRFFNHSCAPNMYAQNVLYDHGDCRIPHIMLFAAENIPPLKELTYDYNYSKDQIYDSDGNIKKKDCFCGSVGCTGRMY 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1677 654 Pfam SAD/SRA domain 213 361 IPR003105 -
Prci6g1677 654 Pfam Pre-SET motif 386 481 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Prci6g1677 654 ProSiteProfiles Post-SET domain profile. 638 654 IPR003616 -
Prci6g1677 654 ProSiteProfiles YDG domain profile. 214 357 IPR003105 -
Prci6g1677 654 SUPERFAMILY SET domain 372 631 IPR046341 -
Prci6g1677 654 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 104 646 - -
Prci6g1677 654 SUPERFAMILY PUA domain-like 196 370 IPR015947 -
Prci6g1677 654 SMART PostSET_3 638 654 IPR003616 -
Prci6g1677 654 SMART set_7 489 630 IPR001214 GO:0005515
Prci6g1677 654 SMART G9a_1 209 361 IPR003105 -
Prci6g1677 654 Gene3D - 198 377 IPR036987 -
Prci6g1677 654 SMART preset_2 383 473 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Prci6g1677 654 ProSiteProfiles Pre-SET domain profile. 427 486 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Prci6g1677 654 ProSiteProfiles SET domain profile. 489 624 IPR001214 GO:0005515
Prci6g1677 654 Gene3D SET domain 378 654 IPR046341 -
Prci6g1677 654 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 74 654 IPR025794 GO:0016571
Prci6g1677 654 Pfam SET domain 500 624 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1677 Prci-Chr6 13911139 13914468 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1677 147 651 Su(var)3-9 homologs AT5G04940 39.509 4.56e-113 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Prci6g1677 SAD_SRA 1.1e-50 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1677 K11420 - qsa:O6P43_024410 721.079