Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1672 ATGGATATGTCTTCTGATATTTCACATGCCGCTTCGTCTTCGTCTCCATACAGAGGTGTTCGCAAGAGAAAATGGGGGAAATGGGTTTCCGAAATCAGAGAGCCTGGAAAGAAGACCAGAATTTGGTTGGGCAGCTTCAAGACGCCGGAGATGGCCGCTGCGGCCTACGATGTCGCTGCTTTGCACTTCCGGGGACGCGACGCCAGGCTCAACTTCCCCGAGCTCGCCGGCAGCCTCCCCCGACCAGCAAGTAATGACGCCGACGACATTCGCATGGCGGCACATGAGGCCGCCCTAAGGCTGATGACGACCGGGTCTGCCGCAGTTCTTGAGCAGTCGTCTGGCTCCGAGGCGGCACCGATGATGGTCCGGCTCTCGCCGATGCAGATTCAGGCGATCAATGAGATGCCGCTAGACTCGCCGAGGATGTGGATGCAAATGGCGGACTCAACGATGTTAGATGAAACGATGTCGTTTATGTATGAGTATGACGAGGATATGCAAAGTGATTCTCTGTGGGATCCATAG 528 0.5568 MDMSSDISHAASSSSPYRGVRKRKWGKWVSEIREPGKKTRIWLGSFKTPEMAAAAYDVAALHFRGRDARLNFPELAGSLPRPASNDADDIRMAAHEAALRLMTTGSAAVLEQSSGSEAAPMMVRLSPMQIQAINEMPLDSPRMWMQMADSTMLDETMSFMYEYDEDMQSDSLWDP 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1672 175 SUPERFAMILY DNA-binding domain 15 74 IPR016177 GO:0003677
Prci6g1672 175 Gene3D AP2/ERF domain 16 74 IPR036955 GO:0003700|GO:0006355
Prci6g1672 175 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 143 - -
Prci6g1672 175 FunFam Ethylene-responsive transcription factor 2 15 74 - -
Prci6g1672 175 CDD AP2 17 75 IPR001471 GO:0003700|GO:0006355
Prci6g1672 175 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700|GO:0006355
Prci6g1672 175 Pfam AP2 domain 17 65 IPR001471 GO:0003700|GO:0006355
Prci6g1672 175 PRINTS Ethylene responsive element binding protein signature 55 75 IPR001471 GO:0003700|GO:0006355
Prci6g1672 175 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Prci6g1672 175 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1672 Prci-Chr6 13826635 13827922 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1672 15 175 AP2-EREBP Transcription Factor Family AT1G71450 62.941 1.92e-65 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci6g1672 AP2 4.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1672 - - aprc:113869810 236.498