Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1659 ATGTCTCGAATGCTTAGCATTTCTCGGGATTCAGAAGCAGAACATGTTGCTGCCGGATGGCCATTGTGGTTATCTTCAGTAGCAGGAGATGCCATCAAAGGGTGGGTTCCTCGACGGCTAGACTCTTTCGAGAAGTTAGGCCAAGTTGGCCAAGGTGCCTATAGCAGTGTACACAAGGCTCGTGACCTTCAAACTGGTAAAATCGTGGCATTGAAGAAAGTGCGCTTTTCACCTTCAGATGCTGAAAGTGTTCGGTTTATGGCTAGGGAAATCTATATTTTGCGTCAACTTGACCATCCAAATGTCATGAAGCTTGAGGCTATCGTGACATCAAGGACGTCCAACAGCTTGTATCTTGTCTTTGAGTACATGGAACATGACCTTGCGGGACTAGAAGCATTGCCTGGGACAAAGTTCACTGAACCTCAGATAAAATGTTATATGCAGCAATTGCTTTGTGGGCTTGAACACTGCCATAATCACGGCGTGCTACACCGTGACATCAAGGGTTCAAATCTGCTGATTAACAGTGATGGAATTCTTAAGATTGCTGACTTTGGTCTTTCAACTATTTACCAAACTGATGAAAAAGAGCCATTGACTAGCCGTGTTGTGACTCTGTGGTACAGGCCACCTGCTTTGCTTGGTGCTACAGATTATGGACCTACAATTGACTTGTGGAGTGCTGGATGCATTCTAGCAGAATTGCTGTACGGGAAGCCTATTATGCCAGGAAGAACAGAGGTGGAACAAATGCATAAGATTTTTAAGCTTTGTGGTTCCCCATCTGAAGAGTTCTGGCAGAAAACAAAATTGCCACATGCAACAAGTTTAAACCTCAGCAACAATTACAGACGCCGTGTTTCTGAAACATTTAGAGACTTTCCTTCTGCCTTGGCTCTTGTTGAAAAGCTCCTTGCAATAGAGCCAGAAGATCGAGGTTCAGCAACTTCTGCTCTTCAAAGTGAGTTCTTCACATCACCGCCCCTACCTTGTGATCCATCAAGTTTACCGAAAGTTTCCTCCTAG 1029 0.447 MSRMLSISRDSEAEHVAAGWPLWLSSVAGDAIKGWVPRRLDSFEKLGQVGQGAYSSVHKARDLQTGKIVALKKVRFSPSDAESVRFMAREIYILRQLDHPNVMKLEAIVTSRTSNSLYLVFEYMEHDLAGLEALPGTKFTEPQIKCYMQQLLCGLEHCHNHGVLHRDIKGSNLLINSDGILKIADFGLSTIYQTDEKEPLTSRVVTLWYRPPEXLLGATDYGPTIDLWSAGCILAELLYGKPIMPGRTEVEQMHKIFKLCGSPSEEFWQKTKLPHATSLNLSNNYRRRVSETFRDFXPSALALVEKLLAIEPEDRGSATSALQSEFFTSPPLPCDPSSLPKVSS 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1659 344 FunFam probable serine/threonine-protein kinase At1g54610 30 125 - -
Prci6g1659 344 SUPERFAMILY Protein kinase-like (PK-like) 36 335 IPR011009 -
Prci6g1659 344 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Prci6g1659 344 Gene3D Transferase(Phosphotransferase) domain 1 131 343 - -
Prci6g1659 344 SMART serkin_6 43 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci6g1659 344 Pfam Protein kinase domain 43 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci6g1659 344 ProSitePatterns Protein kinases ATP-binding region signature. 49 72 IPR017441 GO:0005524
Prci6g1659 344 ProSiteProfiles Protein kinase domain profile. 43 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci6g1659 344 PANTHER CELL DIVISION PROTEIN KINASE 41 333 - -
Prci6g1659 344 MobiDBLite consensus disorder prediction 320 344 - -
Prci6g1659 344 CDD STKc_CDK9_like 43 327 - -
Prci6g1659 344 Gene3D Phosphorylase Kinase; domain 1 37 130 - -
Prci6g1659 344 FunFam probable serine/threonine-protein kinase At1g54610 126 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1659 Prci-Chr6 13639959 13644110 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1659 35 344 Core Cell Cycle Gene Families AT5G10270 52.761 1.03e-115 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Prci6g1659 Pkinase 3.6e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1659 K08819 - gmx:100817858 546.969